Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAB_RS04635 Genome accession   NC_007622
Coordinates   939233..940219 (+) Length   328 a.a.
NCBI ID   WP_000959274.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 934233..945219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS04615 - 934603..936224 (+) 1622 Protein_893 peptide ABC transporter substrate-binding protein -
  SAB_RS04620 (SAB0863c) trpS 936344..937333 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAB_RS04625 (SAB0864) spxA 937628..938023 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAB_RS04630 (SAB0865) mecA 938394..939113 (+) 720 WP_001217733.1 adaptor protein MecA -
  SAB_RS04635 (SAB0866) coiA 939233..940219 (+) 987 WP_000959274.1 competence protein CoiA Machinery gene
  SAB_RS04640 (SAB0867) pepF 940267..942075 (+) 1809 WP_000082719.1 oligoendopeptidase F -
  SAB_RS04645 (SAB0868c) yjbH 942535..943341 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SAB_RS04650 (SAB0869c) - 943364..943729 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SAB_RS04655 (SAB0870c) - 943833..944426 (-) 594 WP_000224617.1 CYTH domain-containing protein -
  SAB_RS04660 (SAB0871) - 944612..944959 (+) 348 WP_001242108.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38651.22 Da        Isoelectric Point: 9.5295

>NTDB_id=25142 SAB_RS04635 WP_000959274.1 939233..940219(+) (coiA) [Staphylococcus aureus RF122]
MLVALNEEKERVLATTALRKTQCFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGHAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=25142 SAB_RS04635 WP_000959274.1 939233..940219(+) (coiA) [Staphylococcus aureus RF122]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATGTTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGCATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963

Multiple sequence alignment