Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | SYNPCC7942_RS06255 | Genome accession | NC_007604 |
| Coordinates | 1242455..1242832 (-) | Length | 125 a.a. |
| NCBI ID | WP_011377923.1 | Uniprot ID | Q79PF9 |
| Organism | Synechococcus elongatus PCC 7942 = FACHB-805 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1237455..1247832
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNPCC7942_RS06225 (Synpcc7942_1215) | - | 1237546..1238553 (+) | 1008 | WP_011377920.1 | acyl-CoA dehydrogenase family protein | - |
| SYNPCC7942_RS06230 (Synpcc7942_1216) | kaiC | 1238550..1240109 (-) | 1560 | WP_011242648.1 | circadian clock protein KaiC | - |
| SYNPCC7942_RS06235 (Synpcc7942_1217) | kaiB | 1240159..1240467 (-) | 309 | WP_011242647.1 | circadian clock protein KaiB | - |
| SYNPCC7942_RS06240 (Synpcc7942_1218) | - | 1240557..1241411 (-) | 855 | WP_011377921.1 | circadian clock protein KaiA | - |
| SYNPCC7942_RS06245 (Synpcc7942_1219) | rplU | 1241649..1242032 (+) | 384 | WP_011377922.1 | 50S ribosomal protein L21 | - |
| SYNPCC7942_RS06250 (Synpcc7942_1220) | rpmA | 1242067..1242333 (+) | 267 | WP_011242644.1 | 50S ribosomal protein L27 | - |
| SYNPCC7942_RS06255 (Synpcc7942_1221) | pilH | 1242455..1242832 (-) | 378 | WP_011377923.1 | response regulator | Machinery gene |
| SYNPCC7942_RS06260 (Synpcc7942_1222) | truB | 1242925..1243809 (+) | 885 | WP_011242642.1 | tRNA pseudouridine(55) synthase TruB | - |
| SYNPCC7942_RS06265 (Synpcc7942_1223) | devC | 1243830..1245008 (-) | 1179 | WP_011377924.1 | ABC transporter permease DevC | - |
| SYNPCC7942_RS06270 (Synpcc7942_1224) | - | 1244992..1246092 (-) | 1101 | WP_011242640.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| SYNPCC7942_RS06275 (Synpcc7942_1225) | - | 1246181..1246927 (-) | 747 | WP_011377925.1 | phycocyanobilin:ferredoxin oxidoreductase | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 13841.82 Da Isoelectric Point: 4.5355
>NTDB_id=25142 SYNPCC7942_RS06255 WP_011377923.1 1242455..1242832(-) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805]
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS
Nucleotide
Download Length: 378 bp
>NTDB_id=25142 SYNPCC7942_RS06255 WP_011377923.1 1242455..1242832(-) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
48.739 |
95.2 |
0.464 |
| vicR | Streptococcus mutans UA159 |
37.097 |
99.2 |
0.368 |