Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAB_RS02670 Genome accession   NC_007622
Coordinates   542860..543429 (+) Length   189 a.a.
NCBI ID   WP_000872871.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 537860..548429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS02645 (SAB0479) cysE 539073..539720 (+) 648 WP_011382202.1 serine O-acetyltransferase -
  SAB_RS02650 (SAB0480) cysS 539704..541104 (+) 1401 WP_000631985.1 cysteine--tRNA ligase -
  SAB_RS02655 (SAB0481) - 541097..541501 (+) 405 WP_000370187.1 Mini-ribonuclease 3 -
  SAB_RS02660 (SAB0482) rlmB 541509..542255 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAB_RS02665 (SAB0483) - 542255..542779 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SAB_RS02670 (SAB0484) sigH 542860..543429 (+) 570 WP_000872871.1 sigma-70 family RNA polymerase sigma factor Regulator
  SAB_RS14250 (SAB0485) rpmG 543544..543687 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SAB_RS02675 (SAB0486) secE 543743..543925 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAB_RS02680 (SAB0487) nusG 543938..544486 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAB_RS02685 (SAB0488) rplK 544667..545089 (+) 423 WP_001085789.1 50S ribosomal protein L11 -
  SAB_RS02690 (SAB0489) rplA 545297..545989 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAB_RS02695 (SAB0490) rplJ 546261..546761 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SAB_RS02700 (SAB0491) rplL 546802..547169 (+) 368 Protein_513 50S ribosomal protein L7/L12 -
  SAB_RS02705 (SAB0492) - 547344..547952 (+) 609 WP_000020294.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=25136 SAB_RS02670 WP_000872871.1 542860..543429(+) (sigH) [Staphylococcus aureus RF122]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKNLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=25136 SAB_RS02670 WP_000872871.1 542860..543429(+) (sigH) [Staphylococcus aureus RF122]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTGGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGAAAAAATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment