Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CRN81_RS19535 | Genome accession | NZ_CP024028 |
| Coordinates | 4185129..4186256 (+) | Length | 375 a.a. |
| NCBI ID | WP_043614018.1 | Uniprot ID | - |
| Organism | Chromobacterium violaceum strain CV1192 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4180129..4191256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN81_RS19485 (CRN81_19480) | rplK | 4180725..4181156 (-) | 432 | WP_011137744.1 | 50S ribosomal protein L11 | - |
| CRN81_RS19490 (CRN81_19485) | nusG | 4181257..4181790 (-) | 534 | WP_011137745.1 | transcription termination/antitermination protein NusG | - |
| CRN81_RS19495 (CRN81_19490) | secE | 4181790..4182146 (-) | 357 | WP_011137746.1 | preprotein translocase subunit SecE | - |
| CRN81_RS19505 (CRN81_19500) | tuf | 4182297..4183487 (-) | 1191 | WP_011137735.1 | elongation factor Tu | - |
| CRN81_RS19525 (CRN81_19520) | - | 4183977..4184228 (-) | 252 | WP_011137747.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CRN81_RS19530 (CRN81_19525) | rsmD | 4184338..4184892 (-) | 555 | WP_043614015.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| CRN81_RS19535 (CRN81_19530) | pilA | 4185129..4186256 (+) | 1128 | WP_043614018.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CRN81_RS19540 (CRN81_19535) | ftsE | 4186317..4186970 (+) | 654 | WP_011137750.1 | cell division ATP-binding protein FtsE | - |
| CRN81_RS19545 (CRN81_19540) | ftsX | 4186967..4187875 (+) | 909 | WP_099427669.1 | permease-like cell division protein FtsX | - |
| CRN81_RS19550 (CRN81_19545) | rpoH | 4188004..4188867 (+) | 864 | WP_011137752.1 | RNA polymerase sigma factor RpoH | - |
| CRN81_RS19555 (CRN81_19550) | - | 4188958..4190787 (-) | 1830 | WP_332835148.1 | PglL family O-oligosaccharyltransferase | - |
| CRN81_RS20875 | - | 4190836..4190955 (-) | 120 | Protein_3876 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 40007.17 Da Isoelectric Point: 5.1869
>NTDB_id=251312 CRN81_RS19535 WP_043614018.1 4185129..4186256(+) (pilA) [Chromobacterium violaceum strain CV1192]
MFSFFKKKTKPAETPQIETPAPLAPEQAPAAPETIAPVPEPQREPVAAPIAETAPASAEAAVAAIPDEPVPLKKMSWTER
LKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGMDATVHLLQDVRERVSLKGLKDSSELKGALKDSLQDL
IGPLEVPLNVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQGGD
SAAVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVKAFDDALG
LTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLRPFDSRDYIDALFE
MFSFFKKKTKPAETPQIETPAPLAPEQAPAAPETIAPVPEPQREPVAAPIAETAPASAEAAVAAIPDEPVPLKKMSWTER
LKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGMDATVHLLQDVRERVSLKGLKDSSELKGALKDSLQDL
IGPLEVPLNVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQGGD
SAAVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVKAFDDALG
LTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLRPFDSRDYIDALFE
Nucleotide
Download Length: 1128 bp
>NTDB_id=251312 CRN81_RS19535 WP_043614018.1 4185129..4186256(+) (pilA) [Chromobacterium violaceum strain CV1192]
ATGTTTAGCTTCTTCAAGAAAAAGACCAAGCCGGCCGAAACGCCGCAGATCGAAACGCCGGCGCCGCTCGCGCCGGAACA
GGCGCCCGCCGCGCCGGAGACCATCGCCCCCGTCCCGGAGCCGCAGCGCGAGCCCGTCGCCGCCCCCATCGCGGAAACAG
CCCCCGCCTCTGCTGAGGCCGCCGTTGCGGCCATCCCTGACGAGCCCGTGCCCCTGAAGAAAATGAGCTGGACCGAGCGG
CTGAAGGCAGGCCTGGCCAAAACCCGCGACAAGCTGGGCAAGCAGCTGGCCGGCCTGTTCGGCGGCGGCAAGATCGACGA
AGACCTGTACGAGGAACTGGAGACGGTGCTGCTGACCGCCGACATGGGCATGGACGCCACCGTGCACCTGCTGCAGGACG
TGCGCGAGCGGGTATCGCTGAAGGGGCTGAAAGATTCGTCCGAATTGAAGGGCGCGCTGAAGGATTCGCTGCAGGATCTG
ATCGGCCCGCTGGAAGTGCCGCTGAACGTGGAAGGCAAGAAGCCGTTCGTGATCATGATGACCGGCGTCAACGGCGCCGG
CAAGACCACCTCCATCGGCAAGCTGGCCAAGTATTACCAGAGCCAGGGCAAAAGCGTGCTGCTGGCCGCCGGCGACACCT
TCCGCGCCGCCGCGCGCGAGCAGCTGATCGCCTGGGGCGAGCGCAACAACGTCACCGTGATCGCGCAGCAAGGCGGCGAC
TCCGCCGCCGTCTGCTATGACGCGATCCAGGCCGCCATCGCCCGCGGCATCGACATCGTGCTGGCCGACACCGCGGGCCG
CCTGCCGACCCAGCTGCACCTGATGGAAGAGATCAAGAAGGTGAAGCGCGTGATCCAGAAGGCGCTGCCGGACGCGCCGC
ACGAGGTGGTACTGGTGCTGGACGCCAATATCGGCCAGAACACCGTCAATCAGGTGAAGGCCTTCGACGACGCGCTGGGC
CTGACCGGCTTGATCCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGATCGCCGCCATCGCCAAGCAGCGGCCGAT
TCCGCTGCGCTTCGTCGGCGTCGGCGAGAGCATCGACGACCTGCGGCCGTTCGACAGCCGGGACTACATCGACGCGCTGT
TCGAATAA
ATGTTTAGCTTCTTCAAGAAAAAGACCAAGCCGGCCGAAACGCCGCAGATCGAAACGCCGGCGCCGCTCGCGCCGGAACA
GGCGCCCGCCGCGCCGGAGACCATCGCCCCCGTCCCGGAGCCGCAGCGCGAGCCCGTCGCCGCCCCCATCGCGGAAACAG
CCCCCGCCTCTGCTGAGGCCGCCGTTGCGGCCATCCCTGACGAGCCCGTGCCCCTGAAGAAAATGAGCTGGACCGAGCGG
CTGAAGGCAGGCCTGGCCAAAACCCGCGACAAGCTGGGCAAGCAGCTGGCCGGCCTGTTCGGCGGCGGCAAGATCGACGA
AGACCTGTACGAGGAACTGGAGACGGTGCTGCTGACCGCCGACATGGGCATGGACGCCACCGTGCACCTGCTGCAGGACG
TGCGCGAGCGGGTATCGCTGAAGGGGCTGAAAGATTCGTCCGAATTGAAGGGCGCGCTGAAGGATTCGCTGCAGGATCTG
ATCGGCCCGCTGGAAGTGCCGCTGAACGTGGAAGGCAAGAAGCCGTTCGTGATCATGATGACCGGCGTCAACGGCGCCGG
CAAGACCACCTCCATCGGCAAGCTGGCCAAGTATTACCAGAGCCAGGGCAAAAGCGTGCTGCTGGCCGCCGGCGACACCT
TCCGCGCCGCCGCGCGCGAGCAGCTGATCGCCTGGGGCGAGCGCAACAACGTCACCGTGATCGCGCAGCAAGGCGGCGAC
TCCGCCGCCGTCTGCTATGACGCGATCCAGGCCGCCATCGCCCGCGGCATCGACATCGTGCTGGCCGACACCGCGGGCCG
CCTGCCGACCCAGCTGCACCTGATGGAAGAGATCAAGAAGGTGAAGCGCGTGATCCAGAAGGCGCTGCCGGACGCGCCGC
ACGAGGTGGTACTGGTGCTGGACGCCAATATCGGCCAGAACACCGTCAATCAGGTGAAGGCCTTCGACGACGCGCTGGGC
CTGACCGGCTTGATCCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGATCGCCGCCATCGCCAAGCAGCGGCCGAT
TCCGCTGCGCTTCGTCGGCGTCGGCGAGAGCATCGACGACCTGCGGCCGTTCGACAGCCGGGACTACATCGACGCGCTGT
TCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.158 |
100 |
0.704 |