Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CRN81_RS15335 Genome accession   NZ_CP024028
Coordinates   3329265..3330665 (+) Length   466 a.a.
NCBI ID   WP_099427422.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain CV1192     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324265..3335665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN81_RS15310 (CRN81_15300) - 3325872..3326849 (+) 978 WP_099427421.1 KpsF/GutQ family sugar-phosphate isomerase -
  CRN81_RS15315 (CRN81_15305) - 3326896..3327420 (+) 525 WP_048403552.1 KdsC family phosphatase -
  CRN81_RS15320 (CRN81_15310) lptC 3327417..3327986 (+) 570 WP_081526418.1 LPS export ABC transporter periplasmic protein LptC -
  CRN81_RS15325 (CRN81_15315) lptA 3327976..3328536 (+) 561 WP_011136877.1 lipopolysaccharide transport periplasmic protein LptA -
  CRN81_RS15330 (CRN81_15320) lptB 3328533..3329261 (+) 729 WP_011136878.1 LPS export ABC transporter ATP-binding protein -
  CRN81_RS15335 (CRN81_15325) rpoN/rpoN1 3329265..3330665 (+) 1401 WP_099427422.1 RNA polymerase factor sigma-54 Machinery gene
  CRN81_RS15340 (CRN81_15330) hpf 3330733..3331065 (+) 333 WP_011136880.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CRN81_RS15345 (CRN81_15335) ptsN 3331188..3331649 (+) 462 WP_043614987.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CRN81_RS15350 (CRN81_15340) hprK 3331642..3332598 (+) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  CRN81_RS15355 (CRN81_15345) rapZ 3332579..3333421 (+) 843 WP_043615063.1 RNase adapter RapZ -
  CRN81_RS15360 (CRN81_15350) - 3333474..3334079 (+) 606 WP_011136884.1 flavin prenyltransferase UbiX -
  CRN81_RS15365 (CRN81_15355) - 3334082..3335548 (+) 1467 WP_099427423.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51501.61 Da        Isoelectric Point: 4.8655

>NTDB_id=251304 CRN81_RS15335 WP_099427422.1 3329265..3330665(+) (rpoN/rpoN1) [Chromobacterium violaceum strain CV1192]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDEPRDGEAPGDGPEQQDSPAEAQEADSRDD
GAGELLDWGAGARKGDDDDFDPMLNVPCPISLREHLLTQLGELALTDRDRAVVSLLIEELDDDGYLPLGLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLTLQLRRLPGDEPGHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
DAQALIARLNPHPATGFGHGDVHYVIPDISVRKLRGRWTAELNRAAMPRLRVNRLYERMLADHRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQLFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIEAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=251304 CRN81_RS15335 WP_099427422.1 3329265..3330665(+) (rpoN/rpoN1) [Chromobacterium violaceum strain CV1192]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAACTGCAGCAATCGATCAAGCTGCTGCA
GCTGTCCACGCTGGATCTGCAGGCGGAAGTGGAACGCTTCCTGCTCGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAGGCCCCGGGCGACGGCCCCGAGCAGCAGGACAGCCCGGCCGAAGCGCAGGAAGCCGATAGCCGCGACGAC
GGCGCCGGCGAGCTGCTGGACTGGGGCGCGGGCGCCCGCAAGGGGGACGACGACGACTTCGACCCCATGCTCAACGTGCC
CTGCCCCATCAGCCTGCGCGAGCACCTGCTGACCCAGCTGGGCGAGCTCGCCCTCACCGACCGCGACCGCGCGGTGGTCA
GCCTGCTGATCGAGGAGCTGGACGACGACGGCTACCTGCCGCTGGGACTGGACGAACTGGCCGGCAACCTGCCGCTGGAG
CTGGAGCTGGACAGCGACGAGCTGGCGGTGGGCCTCGCGCTGCTGCAGCAGTTCGACCCGGCCGGCGTCGGCGCCCGCTC
GCTGGCCGAATCGCTGACGCTGCAGCTGCGGCGCCTGCCGGGAGACGAGCCCGGACACGCGCTGGCGCTGGCCATCGTCC
GCGAGCATCTGGCATTGCTGGGCGGACGCGACTACGCCAGGCTGAAAAAGCTGCTGCGCTGCGACGACGCCGCGCTGCGC
GACGCGCAGGCGCTGATCGCCAGGCTCAACCCCCACCCCGCCACCGGCTTCGGCCACGGCGACGTCCACTACGTGATCCC
CGACATCAGCGTACGCAAGCTGCGCGGCCGCTGGACCGCCGAGCTCAACCGCGCCGCGATGCCCCGCCTGCGGGTCAACC
GGCTGTACGAACGAATGCTGGCCGACCACCGCGCCGGCGGCGAAATGTCGGGCCGTCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAGCGATTTGACACCATACTCAAAGTGGCAGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATTCTGCGGGACATCGCGGAAGAGCTGGGCCTGCACGAATCCACCGTTTCCCGAT
CCACCAGCCAGAAATACCTGCTCTGTTCGCGGGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCATATCCGCGGCATGATAGAAGCCGAGGACCGCGCCAAGCCGCT
GTCCGACAGCGCCATCGCCGACGCGCTGGCCAAACAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.56

Multiple sequence alignment