Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CRN81_RS09970 Genome accession   NZ_CP024028
Coordinates   2162444..2163238 (+) Length   264 a.a.
NCBI ID   WP_011135741.1    Uniprot ID   Q7NVZ7
Organism   Chromobacterium violaceum strain CV1192     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157444..2168238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN81_RS09940 (CRN81_09930) - 2157523..2158245 (-) 723 WP_099426959.1 metallophosphoesterase -
  CRN81_RS09945 (CRN81_09935) - 2158270..2158923 (-) 654 WP_043613811.1 HD domain-containing protein -
  CRN81_RS09950 (CRN81_09940) - 2159065..2159913 (-) 849 WP_043596046.1 GNAT family N-acetyltransferase -
  CRN81_RS09955 (CRN81_09945) - 2159910..2160521 (-) 612 WP_099426960.1 AraC family transcriptional regulator -
  CRN81_RS09960 (CRN81_09950) pgeF 2160627..2161364 (-) 738 WP_099426961.1 peptidoglycan editing factor PgeF -
  CRN81_RS09965 (CRN81_09955) rluD 2161354..2162445 (-) 1092 WP_011135740.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CRN81_RS09970 (CRN81_09960) comL 2162444..2163238 (+) 795 WP_011135741.1 outer membrane protein assembly factor BamD Machinery gene
  CRN81_RS09975 (CRN81_09965) - 2163306..2164337 (-) 1032 WP_099426962.1 NAD(P)H-dependent flavin oxidoreductase -
  CRN81_RS09980 (CRN81_09970) - 2164418..2164609 (+) 192 WP_011135743.1 hypothetical protein -
  CRN81_RS09985 (CRN81_09975) rpsB 2164759..2165490 (+) 732 WP_011135744.1 30S ribosomal protein S2 -
  CRN81_RS09990 (CRN81_09980) tsf 2165564..2166430 (+) 867 WP_048404821.1 translation elongation factor Ts -
  CRN81_RS09995 (CRN81_09985) pyrH 2166522..2167241 (+) 720 WP_011135746.1 UMP kinase -
  CRN81_RS10000 (CRN81_09990) frr 2167317..2167874 (+) 558 WP_011135747.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30267.42 Da        Isoelectric Point: 7.9695

>NTDB_id=251299 CRN81_RS09970 WP_011135741.1 2162444..2163238(+) (comL) [Chromobacterium violaceum strain CV1192]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPSSSYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLAL
NYPQSQYLGKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=251299 CRN81_RS09970 WP_011135741.1 2162444..2163238(+) (comL) [Chromobacterium violaceum strain CV1192]
ATGAAAAGATACGTTGTTGCGGCTATGTTGGTGATGGTGGGTCTTGCCGGGTGTGCGACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCGCAGATGGATCTGGCCTACACCCATTAC
AAGGATGGCGAACCCGAACTGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTGCATCCCACGCATCCGAACCTCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGACGATTCTGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGCGCCGCGCGCGAGGCGTTCGCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAGCAGCAGCTACGCG
CCGGACGCCAAGGCCAAGATGATCCGCCTGGTGGACGCCCTGGGCGGCAACGAAATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCCGCCAATCGCGCGCAGGGCGTGGTCAAGGATTACGCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGCTGCCGCAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AATTACCCGCAGAGCCAGTACCTGGGCAAGTCGTGGACGGTGGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NVZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment