Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | BXP16_RS07555 | Genome accession | NZ_CP024022 |
| Coordinates | 1551621..1552757 (-) | Length | 378 a.a. |
| NCBI ID | WP_001045869.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7.13_D3b | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1546621..1557757
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP16_RS07535 (BXP16_07530) | hypE | 1546736..1547734 (+) | 999 | WP_000378855.1 | hydrogenase expression/formation protein HypE | - |
| BXP16_RS07540 (BXP16_07535) | - | 1548041..1548973 (-) | 933 | WP_001006014.1 | GDP-L-fucose synthase | - |
| BXP16_RS07545 (BXP16_07540) | gmd | 1548966..1550111 (-) | 1146 | WP_000659801.1 | GDP-mannose 4,6-dehydratase | - |
| BXP16_RS07550 (BXP16_07545) | - | 1550139..1551551 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| BXP16_RS07555 (BXP16_07550) | comB10 | 1551621..1552757 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BXP16_RS07560 (BXP16_07555) | comB9 | 1552750..1553733 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BXP16_RS07565 (BXP16_07560) | comB8 | 1553733..1554476 (-) | 744 | WP_000660520.1 | virB8 family protein | Machinery gene |
| BXP16_RS07570 (BXP16_07565) | comB7 | 1554473..1554586 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| BXP16_RS07575 (BXP16_07570) | comB6 | 1554602..1555657 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BXP16_RS07580 (BXP16_07575) | - | 1555665..1556660 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| BXP16_RS07585 (BXP16_07580) | - | 1556660..1556962 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BXP16_RS07590 (BXP16_07585) | panD | 1556965..1557318 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42295.98 Da Isoelectric Point: 10.0478
>NTDB_id=251199 BXP16_RS07555 WP_001045869.1 1551621..1552757(-) (comB10) [Helicobacter pylori strain 7.13_D3b]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=251199 BXP16_RS07555 WP_001045869.1 1551621..1552757(-) (comB10) [Helicobacter pylori strain 7.13_D3b]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |