Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   CSC29_RS27235 Genome accession   NZ_CP029090
Coordinates   5576724..5577248 (-) Length   174 a.a.
NCBI ID   WP_034085786.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR442     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5571724..5582248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC29_RS27220 (CSC29_5492) aroB 5572840..5573946 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  CSC29_RS27225 (CSC29_5493) aroK 5573996..5574514 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CSC29_RS27230 (CSC29_5494) pilQ 5574526..5576670 (-) 2145 WP_023465329.1 type 4a pilus secretin PilQ Machinery gene
  CSC29_RS27235 (CSC29_5495) comL/pilP 5576724..5577248 (-) 525 WP_034085786.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CSC29_RS27240 (CSC29_5496) pilO 5577245..5577868 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  CSC29_RS27245 (CSC29_5497) pilN 5577865..5578461 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CSC29_RS27250 (CSC29_5498) pilM 5578461..5579525 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  CSC29_RS27255 (CSC29_5499) - 5579710..5582181 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19085.90 Da        Isoelectric Point: 9.4114

>NTDB_id=251201 CSC29_RS27235 WP_034085786.1 5576724..5577248(-) (comL/pilP) [Pseudomonas aeruginosa strain AR442]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPMKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=251201 CSC29_RS27235 WP_034085786.1 5576724..5577248(-) (comL/pilP) [Pseudomonas aeruginosa strain AR442]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGATGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment