Detailed information NTG0025117

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMUL_RS11120
• Genome accession: NC_007614
• Coordinates: 2424846..2425754 (-)
• Length: 302 a.a.
• NCBI ID: WP_011381433.1
• Uniprot ID: -
• Organism: Nitrosospira multiformis ATCC 25196
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2419846..2430754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMUL_RS11095 (Nmul_A2126)	ispF	2420408..2420941 (-)	534	WP_011381428.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NMUL_RS11100 (Nmul_A2127)	ispD	2421068..2421766 (-)	699	WP_011381429.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NMUL_RS11105 (Nmul_A2128)	-	2422046..2423020 (+)	975	WP_011381430.1	sigma 54-interacting transcriptional regulator	-
NMUL_RS11110 (Nmul_A2129)	zapD	2423358..2424113 (-)	756	WP_041353205.1	cell division protein ZapD	-
NMUL_RS11115 (Nmul_A2130)	coaE	2424239..2424841 (-)	603	WP_011381432.1	dephospho-CoA kinase	-
NMUL_RS11120 (Nmul_A2131)	pilD	2424846..2425754 (-)	909	WP_011381433.1	prepilin peptidase	Machinery gene
NMUL_RS11125 (Nmul_A2132)	-	2425775..2427073 (-)	1299	WP_011381434.1	HlyC/CorC family transporter	-
NMUL_RS11130 (Nmul_A2133)	-	2427207..2428034 (-)	828	WP_011381435.1	cytochrome C assembly family protein	-
NMUL_RS11135 (Nmul_A2134)	ffh	2428110..2429459 (+)	1350	WP_011381436.1	signal recognition particle protein	-
NMUL_RS11140 (Nmul_A2135)	-	2429516..2429947 (-)	432	WP_011381437.1	DUF192 domain-containing protein	-
NMUL_RS11145 (Nmul_A2136)	dut	2429947..2430396 (-)	450	WP_011381438.1	dUTP diphosphatase	-

Sequence

Protein

• Length: 302 a.a.
• Molecular weight: 32513.22 Da
• Isoelectric Point: 7.1138

>NTDB_id=25117 NMUL_RS11120 WP_011381433.1 2424846..2425754(-) (pilD) [Nitrosospira multiformis ATCC 25196]
MSFISVLQYSPVFFASFCALIGLVAGSFLNVVIYRLPRMLEREWRQQCAELQAELSSGTNGIAPAHEPHEALAAEPAFNL
ITPSSTCPHCGHRITALENIPLISYIALRGRCSQCRTAISMRYPVVEGLTAALSGLVAWHFGYGVIAFAALALVWAMVAL
AFIDLDTQLLPNDITIPLLWGGLLINLSGGFADIHSAVIGAVVGYLALWSVYWGYKLLTGREGMGYGDFKLLAAIGAWLG
WQMLPLVILSSSLVGSMAGLGLMLAAKHGRHVPIPFGPYLVCGGIVALFWGNEINRAYLGSF

Nucleotide

• Length: 909 bp

>NTDB_id=25117 NMUL_RS11120 WP_011381433.1 2424846..2425754(-) (pilD) [Nitrosospira multiformis ATCC 25196]
ATGTCTTTTATCTCCGTGCTGCAATACTCTCCGGTGTTCTTTGCCTCGTTCTGCGCGCTCATTGGTCTGGTCGCCGGCAG
TTTTTTGAATGTGGTTATCTACCGCCTGCCGAGAATGCTGGAGCGGGAATGGCGACAACAGTGCGCCGAACTGCAGGCAG
AACTGTCTTCCGGAACAAACGGGATAGCGCCAGCACACGAACCGCATGAAGCCCTTGCAGCGGAGCCGGCTTTCAATCTC
ATTACGCCGTCTTCCACTTGTCCCCATTGCGGGCACAGGATTACGGCGCTCGAAAATATTCCGCTCATCAGCTACATCGC
ATTGAGGGGACGCTGCTCGCAGTGCCGCACCGCGATTTCCATGCGCTATCCCGTTGTGGAAGGGTTAACCGCAGCGCTGA
GCGGCCTTGTCGCGTGGCATTTTGGTTATGGGGTTATCGCTTTTGCGGCGCTTGCGCTTGTATGGGCCATGGTTGCGCTT
GCTTTCATCGACCTGGATACTCAGTTGCTGCCCAATGACATTACCATCCCCCTGTTATGGGGAGGGTTATTGATTAACCT
GAGCGGTGGTTTTGCGGATATCCATTCTGCCGTGATTGGCGCCGTAGTGGGATATCTTGCCCTGTGGTCGGTGTATTGGG
GTTATAAACTCCTGACCGGCCGGGAGGGAATGGGTTATGGGGACTTCAAGTTGCTGGCCGCCATTGGCGCCTGGCTGGGG
TGGCAAATGCTGCCCCTGGTGATTCTGTCTTCATCCCTCGTGGGAAGCATGGCAGGGCTTGGCCTGATGCTGGCAGCAAA
GCACGGGCGTCATGTCCCTATTCCGTTCGGGCCTTATCTGGTGTGTGGGGGAATCGTGGCTCTGTTTTGGGGAAACGAGA
TCAATAGAGCTTACCTGGGGTCATTTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-141)

• Type IV leader peptidase family (Peptidase_A24) (152-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49	99.338	0.487
pilD	Vibrio campbellii strain DS40M4	48.495	99.007	0.48
pilD	Neisseria gonorrhoeae MS11	46.309	98.675	0.457
pilD	Acinetobacter nosocomialis M2	45.035	93.377	0.421
pilD	Acinetobacter baumannii D1279779	44.326	93.377	0.414