Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NMUL_RS10340 Genome accession   NC_007614
Coordinates   2272172..2272972 (-) Length   266 a.a.
NCBI ID   WP_011381290.1    Uniprot ID   Q2Y7K1
Organism   Nitrosospira multiformis ATCC 25196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267172..2277972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMUL_RS10320 (Nmul_A1971) - 2268771..2269958 (-) 1188 WP_041352549.1 efflux RND transporter periplasmic adaptor subunit -
  NMUL_RS10325 (Nmul_A1972) - 2270083..2270769 (-) 687 WP_011381287.1 ABC transporter ATP-binding protein -
  NMUL_RS10330 (Nmul_A1973) - 2270876..2271460 (+) 585 WP_104009631.1 arylesterase -
  NMUL_RS10335 (Nmul_A1974) - 2271613..2272113 (+) 501 WP_011381289.1 universal stress protein -
  NMUL_RS10340 (Nmul_A1975) comL 2272172..2272972 (-) 801 WP_011381290.1 outer membrane protein assembly factor BamD Machinery gene
  NMUL_RS10345 (Nmul_A1976) rluD 2272971..2274026 (+) 1056 WP_049783108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMUL_RS10350 (Nmul_A1977) pgeF 2274023..2274757 (+) 735 WP_011381292.1 peptidoglycan editing factor PgeF -
  NMUL_RS10355 (Nmul_A1978) - 2274898..2275695 (+) 798 WP_011381293.1 ZIP family metal transporter -
  NMUL_RS10360 (Nmul_A1979) rimO 2275847..2277193 (+) 1347 WP_011381294.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NMUL_RS10365 (Nmul_A1980) - 2277329..2277817 (+) 489 WP_011381295.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30347.48 Da        Isoelectric Point: 6.9812

>NTDB_id=25115 NMUL_RS10340 WP_011381290.1 2272172..2272972(-) (comL) [Nitrosospira multiformis ATCC 25196]
MLRSVALFLALLLSACGLFPKEMEDTKAWSASKYYTEAKSELNDGNYAAAIKLFEALEARYPYGRYAQQAQLEIGYAHYK
DGEQALAIAAADRFIKLHPNHPNVDYAYYLKGLANFNDDLGLMGIVTEKILNQDMSERDPKASHESFENFKELVNRFPKS
KYAPDAVQRMKHLVNVVALNEIQVARYYMKRGGYVAAANRAQYALKEYPQTPATEEALFIMVKAYDALGMTDLRDDADRV
MRKNFPNSRFLSDSTGTNGEPWWKFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=25115 NMUL_RS10340 WP_011381290.1 2272172..2272972(-) (comL) [Nitrosospira multiformis ATCC 25196]
ATGTTACGTAGTGTAGCTTTATTTCTCGCATTGCTGCTATCGGCATGCGGCCTGTTTCCCAAGGAAATGGAGGACACCAA
GGCGTGGTCGGCGAGTAAATACTATACCGAGGCAAAATCGGAATTGAACGATGGCAATTATGCTGCCGCCATCAAACTTT
TTGAAGCGCTGGAAGCGCGCTACCCTTACGGGCGCTATGCGCAGCAGGCGCAGCTGGAAATCGGCTATGCGCATTACAAG
GATGGCGAGCAGGCGCTGGCGATTGCGGCTGCCGATCGTTTCATCAAGCTTCATCCAAACCATCCCAATGTGGATTATGC
GTATTACCTGAAGGGTCTGGCGAATTTCAACGATGACCTGGGGTTGATGGGCATCGTCACGGAAAAGATTCTCAACCAGG
ACATGAGCGAGCGCGATCCCAAGGCATCGCACGAATCATTTGAAAATTTCAAGGAGCTGGTGAACCGTTTTCCCAAGAGC
AAGTACGCGCCCGATGCAGTGCAACGCATGAAGCATCTGGTCAACGTCGTAGCGCTGAATGAAATACAGGTGGCGCGCTA
CTATATGAAACGGGGAGGGTATGTTGCCGCAGCCAACCGCGCCCAATATGCCTTGAAGGAATATCCGCAAACCCCGGCGA
CGGAAGAGGCCTTGTTCATCATGGTGAAGGCCTACGACGCCTTGGGCATGACTGATTTGCGCGATGATGCCGATCGTGTC
ATGAGAAAAAACTTTCCAAACAGCCGTTTTCTATCCGACTCGACGGGGACCAACGGCGAGCCCTGGTGGAAATTCTGGTG
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(30-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2Y7K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.434

99.624

0.492
  comL Neisseria gonorrhoeae MS11

48.302

99.624

0.481

Multiple sequence alignment