Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BS636_RS07335 Genome accession   NZ_CP024011
Coordinates   1538047..1538682 (-) Length   211 a.a.
NCBI ID   WP_099338188.1    Uniprot ID   A0A2D1IPA2
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533047..1543682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS07300 (BS636_07300) mlaE 1533215..1533994 (+) 780 WP_099338182.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BS636_RS07305 (BS636_07305) - 1533994..1534674 (+) 681 WP_099338183.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BS636_RS07310 (BS636_07310) - 1534693..1535328 (+) 636 WP_099338184.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BS636_RS07315 (BS636_07315) - 1535341..1535631 (+) 291 WP_099338185.1 STAS domain-containing protein -
  BS636_RS07320 (BS636_07320) - 1535855..1536868 (-) 1014 WP_099338186.1 CorA family divalent cation transporter -
  BS636_RS07325 (BS636_07325) - 1537022..1537612 (+) 591 WP_099339624.1 TIGR00730 family Rossman fold protein -
  BS636_RS07330 (BS636_07330) - 1537644..1538045 (+) 402 WP_099338187.1 NUDIX hydrolase -
  BS636_RS07335 (BS636_07335) comF 1538047..1538682 (-) 636 WP_099338188.1 ComF family protein Machinery gene
  BS636_RS07340 (BS636_07340) recG 1538669..1540714 (-) 2046 WP_099338189.1 ATP-dependent DNA helicase RecG -
  BS636_RS07345 (BS636_07345) - 1540749..1541549 (+) 801 WP_099338190.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24173.31 Da        Isoelectric Point: 9.3735

>NTDB_id=251144 BS636_RS07335 WP_099338188.1 1538047..1538682(-) (comF) [Acinetobacter sp. LoGeW2-3]
MPMSKLIQQGKHWLGKLQPCQLCHSDYQAIHSVCQDCWQQLPWAHQTIQRQEIQIQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGVLLSLNLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLKVPVWQPVSRLKQHSQKGLSRLERIEDIEAQF
QISTSSKLRYRKVLIIDDVVTTGSSLRALSQKLEELGCQQIYAACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=251144 BS636_RS07335 WP_099338188.1 1538047..1538682(-) (comF) [Acinetobacter sp. LoGeW2-3]
ATGCCTATGTCTAAGTTGATTCAGCAAGGCAAGCACTGGCTGGGCAAGTTACAGCCCTGCCAGCTCTGTCACAGTGATTA
TCAGGCGATTCATTCGGTGTGTCAGGATTGCTGGCAGCAACTGCCTTGGGCACATCAAACTATTCAGCGTCAGGAAATAC
AGATTCAGATTGCTTGTCATTATGACTACCCCATGGATCGCTTGATTCAACTATTTAAGTATGAACAGAAGCTCTATCTG
GAAAATCTGTTGGCAGGTGTTCTGCTAAGCCTGAATCTACCTAAAGTCAGTGCGGTTGTTCCGATGCCGATCTCAACAGA
CAAGCTGGTACAGCGTGGCTATAACCAGTCCTTACTACTGGCGAAACAGGTCGCAAAGCATCTTAAGGTTCCAGTATGGC
AACCAGTAAGTCGACTCAAACAGCATTCACAAAAAGGTTTAAGCCGACTGGAACGGATTGAAGATATTGAGGCACAATTT
CAGATCAGCACATCATCAAAACTGCGTTACCGCAAAGTGCTGATCATTGATGATGTGGTCACGACAGGCAGTTCGCTTCG
TGCACTTAGTCAAAAGCTGGAAGAACTTGGCTGCCAGCAAATTTATGCCGCCTGTGTTGCAGGTGCAAAACTTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1IPA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.622

91.469

0.555
  comF Acinetobacter baumannii D1279779

60.104

91.469

0.55

Multiple sequence alignment