Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BS636_RS06560 Genome accession   NZ_CP024011
Coordinates   1379950..1381515 (-) Length   521 a.a.
NCBI ID   WP_099338058.1    Uniprot ID   -
Organism   Acinetobacter sp. LoGeW2-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374950..1386515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06545 (BS636_06545) gpmI 1375737..1377287 (+) 1551 WP_099338055.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BS636_RS06550 (BS636_06550) - 1377309..1378481 (+) 1173 WP_099338056.1 S41 family peptidase -
  BS636_RS06555 (BS636_06555) pilR 1378507..1379928 (-) 1422 WP_416202911.1 sigma-54-dependent transcriptional regulator Regulator
  BS636_RS06560 (BS636_06560) pilS 1379950..1381515 (-) 1566 WP_099338058.1 sensor histidine kinase Regulator
  BS636_RS06565 (BS636_06565) - 1381565..1382200 (-) 636 WP_004896390.1 response regulator -
  BS636_RS06570 (BS636_06570) - 1382422..1383477 (+) 1056 WP_150128994.1 serine hydrolase -
  BS636_RS06575 (BS636_06575) thrC 1383545..1384684 (-) 1140 WP_099338060.1 threonine synthase -
  BS636_RS06580 (BS636_06580) - 1384742..1386046 (-) 1305 WP_099338061.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59387.94 Da        Isoelectric Point: 6.4975

>NTDB_id=251135 BS636_RS06560 WP_099338058.1 1379950..1381515(-) (pilS) [Acinetobacter sp. LoGeW2-3]
MSQQSSYSELNQYLLGTWYAAYRLIISTGLLLIFLLTYPEHSIDLEYPKLYHYVLSCFIAIALVQLFVLKYFKKFVQKQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLLTLSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDK
FPLYQSQPDLFELIRFENLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKINQEVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGSEQEQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVPIQLNEFIPQCIHEDLADIAE
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDIRDFGQGIAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=251135 BS636_RS06560 WP_099338058.1 1379950..1381515(-) (pilS) [Acinetobacter sp. LoGeW2-3]
ATGTCGCAGCAATCTTCTTATTCAGAGCTTAATCAATACCTGCTGGGCACCTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGATTACTGCTGATTTTTCTGCTCACTTATCCTGAGCACAGCATCGATTTAGAATATCCCAAGCTGTATCATTATG
TGCTGAGCTGTTTTATTGCCATTGCGCTGGTACAGCTCTTTGTTCTGAAATATTTTAAGAAATTTGTGCAGAAGCAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGTCTGCTGACCTTGGCCACAAATGGCACCAATCTGCAGCTGAGCAT
GCTGTTCGTGATTACCATATTTGCTGCCTCAATCCTGTTGAATGCGCAAAAAGCGTTGGTAATTACCCTAATCGCTGTAA
TTAGCGTAATTTACCAGCATTTCATCACCAGTCTGCTTACTCTTTCCTCTTTAGGAAATATTGGTAATAGTGCAATTCTC
GCCTTTATGTTTTTTGTGGTTTATGGCATCGGGCAGATTGCGGTACGACGCTTCCAGATCCTGGAGAATGTCAATTTTTC
TCAGTCGATGGAACTATATCGGCTGCAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGCTATCTGGTGCTGG
ATGAAAATTGCCATGTGGTGCTGAGCAATCCAGCTGCCTGTCACCTGCTCGGCATCCAGCAAATGTATGCGCATGACAAG
TTTCCACTATATCAGTCACAACCAGACCTGTTTGAGCTGATCCGCTTTGAAAATCTGGAAAATGGTGAGCGTTTCCAGTT
TGAATCGCAGCAAAGCCGCTTCAATATTCATGTCCAGGTGCAAAAACTGATTGTGCCGCATCAGACGCTGATGCTACTGG
TATTACAGGATGCACGAAAAATCAATCAAGAAGTACAGCAACTCAAATTAGCCGCACTGGGGCAGCTATCAGCCAGTATT
GCACATGAAATCCGCAATCCGCTGGCTGCCATTGTGCAGGCCAATGACCTGTTACCCGGTTCTGAACAGGAACAGCAGCA
AGTCCTGCATGGCATGATCAGCAAACAGGCCACCCGAATTAACCGGATTATTGAAGACACGCTGAATATGGTGAAAAATA
AAGAAACTCACCCGGTGCCTATTCAGCTAAATGAATTTATTCCGCAATGTATTCATGAGGACTTGGCAGATATTGCTGAG
CAGATTAAGCTGAATATTGATATGCGACTGGATATCCAGTTTGATGAAGCGCAACTACGTCAAGTATTAGTTAATTTATT
ACGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAGGTCTGGA
TTGATATCCGGGATTTTGGTCAGGGCATTGCACCTGCCGATCAGAGCCTGCTGTTCAAGCCATTTTTCAGTACCTCCATC
AATGGTACTGGGCTAGGGCTTTATTTATCACACAGTTTCTGTGAGGCCAACCAGGCCCAGCTGAACTATATACAACAAGA
ACAGGGCGCCTGCTTTCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.03

96.929

0.553

Multiple sequence alignment