Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   BS636_RS06310 Genome accession   NZ_CP024011
Coordinates   1324615..1325769 (-) Length   384 a.a.
NCBI ID   WP_099338020.1    Uniprot ID   A0A2D1INS4
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1319615..1330769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06285 (BS636_06285) - 1320082..1320447 (-) 366 WP_099338015.1 RcnB family protein -
  BS636_RS06290 (BS636_06290) - 1320659..1321204 (-) 546 WP_099338016.1 glutathione peroxidase -
  BS636_RS06295 (BS636_06295) - 1321428..1322327 (+) 900 WP_099338017.1 DMT family transporter -
  BS636_RS06300 (BS636_06300) - 1322767..1323342 (-) 576 WP_099338018.1 L-threonylcarbamoyladenylate synthase -
  BS636_RS06305 (BS636_06305) dprA 1323383..1324522 (-) 1140 WP_099338019.1 DNA-processing protein DprA Machinery gene
  BS636_RS06310 (BS636_06310) tsaP 1324615..1325769 (-) 1155 WP_099338020.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BS636_RS06315 (BS636_06315) def 1325890..1326420 (+) 531 WP_099338021.1 peptide deformylase -
  BS636_RS06320 (BS636_06320) - 1326512..1326928 (+) 417 WP_099338022.1 DUF2946 family protein -
  BS636_RS06325 (BS636_06325) - 1327001..1329031 (+) 2031 WP_099338023.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42014.15 Da        Isoelectric Point: 9.2317

>NTDB_id=251132 BS636_RS06310 WP_099338020.1 1324615..1325769(-) (tsaP) [Acinetobacter sp. LoGeW2-3]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTTHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGMNKLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTVVAPDSVEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENSTSGGQIVRVLGSIGTAARHSVVTIDRGTANGVQSGH
VYSVNQKGEVVTDPKTKERVQLPGERIGNIMVFKTFDQLSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=251132 BS636_RS06310 WP_099338020.1 1324615..1325769(-) (tsaP) [Acinetobacter sp. LoGeW2-3]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAGATGCTCGCACTTGCAGTTTGTGT
AGGTGTTGGTATGGGGACAATTTCAACTACACATGCAGCGCCAGCTCGCAATGTAAATCCACCAAGCTTGAAAGCATCAG
CACCAAATGTCTATGTGGTGAAAAAAGGTGACACATTATGGGATATTTCCAAACGTTTCCTTAAGAATCCGGTGCGCTGG
CCAGAAATCTGGGCAGGCAATAAACATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGTTTGTTGATGTGTGATTA
CCAAGGCCGTCCAATCATCGGTAAAGATGAAGGCGATGGCTGTACCGGTATCATCAACCGCTACCTCGGTATGAATAAGT
TACAGCCGCAGGTACGGGTGGAATCACTCAACAATACCATTCCGGTTATTCCACTGGCGCACATCCAGCAATGGCTAGAA
CGCTACACCGTTGTGGCACCAGATTCTGTTGAAGGCACACCATATATCCTGGGTACAGCGGATCAACGCGTATTGGCAGG
TAAAGGCCAGAAGGTCTATGCACGCGGCAATGGCCTGGAAGTCGGTCAACGCTATGCGGTATATCGTGAAGCTGAACCTT
ATGTATTTACCGATGCTAATGGCAAGAAATATACTGCTGCGCTAGAGCTACAACAAGTGGCATCTGGTATTGCAGTACGT
GGTGAAGGCGATGTGACTACACTAGAACTGACAGATAGCTACAATGCTGAAGTTCGTCGCGGTGACCGTGTCCTACCAGA
ATACGACCCGATGCTACCTACCCTGTTCTACCCAGTAAATGCTGAAAATAGCACTTCAGGTGGTCAGATCGTACGTGTAC
TGGGTTCGATTGGTACTGCTGCACGTCATAGCGTAGTCACGATTGACCGTGGTACAGCAAACGGCGTTCAGTCTGGTCAT
GTATATAGCGTAAACCAGAAAGGCGAAGTGGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCGGGTGAGCGCAT
TGGTAATATCATGGTCTTCAAGACTTTTGATCAGCTTAGCTATGCCTACGTGCTAGACAGCGAATTGCCAATCAAGGTCG
GTGCAACCATTCAACCACCGCTGCTGGATGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1INS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677

Multiple sequence alignment