Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CRN64_RS11290 Genome accession   NZ_CP023970
Coordinates   2376017..2376418 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain FDAARGOS_381     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371017..2381418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN64_RS11275 (CRN64_11275) - 2371471..2373225 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  CRN64_RS11280 (CRN64_11280) - 2373209..2374929 (+) 1721 Protein_2192 ABC transporter ATP-binding protein -
  CRN64_RS12535 - 2374928..2375035 (+) 108 Protein_2193 IS200/IS605 family transposase -
  CRN64_RS11285 (CRN64_11285) - 2375375..2375827 (-) 453 WP_002461221.1 YwpF-like family protein -
  CRN64_RS11290 (CRN64_11290) ssb 2376017..2376418 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  CRN64_RS11295 (CRN64_11295) - 2376897..2377604 (+) 708 WP_002492081.1 transglycosylase family protein -
  CRN64_RS11300 (CRN64_11300) tenA 2378017..2378694 (+) 678 WP_002461217.1 thiaminase II -
  CRN64_RS11305 (CRN64_11305) thiD 2378699..2379520 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CRN64_RS11310 (CRN64_11310) thiM 2379513..2380301 (+) 789 WP_002492088.1 hydroxyethylthiazole kinase -
  CRN64_RS11315 (CRN64_11315) thiE 2380304..2380942 (+) 639 WP_002492090.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=251051 CRN64_RS11290 WP_002461219.1 2376017..2376418(+) (ssb) [Staphylococcus lugdunensis strain FDAARGOS_381]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=251051 CRN64_RS11290 WP_002461219.1 2376017..2376418(+) (ssb) [Staphylococcus lugdunensis strain FDAARGOS_381]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment