Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   CRN29_RS08280 Genome accession   NZ_CP023966
Coordinates   1707279..1707854 (-) Length   191 a.a.
NCBI ID   WP_023350568.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_378     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702279..1712854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN29_RS08235 (CRN29_08235) - 1702585..1703169 (+) 585 WP_023350496.1 hypothetical protein -
  CRN29_RS12330 - 1703903..1704169 (-) 267 WP_023350497.1 hypothetical protein -
  CRN29_RS08240 (CRN29_08240) - 1704200..1704739 (-) 540 WP_226859622.1 hypothetical protein -
  CRN29_RS08245 (CRN29_08245) - 1704958..1705146 (-) 189 WP_023350499.1 hypothetical protein -
  CRN29_RS08250 (CRN29_08250) - 1705179..1705367 (-) 189 WP_023350500.1 hypothetical protein -
  CRN29_RS08255 (CRN29_08255) - 1705829..1706275 (-) 447 WP_023350501.1 hypothetical protein -
  CRN29_RS08280 (CRN29_08280) comK/comK1 1707279..1707854 (-) 576 WP_023350568.1 competence protein ComK Regulator
  CRN29_RS08285 (CRN29_08285) - 1708074..1708292 (+) 219 WP_023350569.1 IDEAL domain-containing protein -
  CRN29_RS08290 (CRN29_08290) - 1708373..1709359 (-) 987 WP_023350570.1 lipoate--protein ligase -
  CRN29_RS08295 (CRN29_08295) - 1709564..1709749 (+) 186 WP_002433441.1 DUF2187 family protein -
  CRN29_RS08300 (CRN29_08300) - 1709755..1710357 (+) 603 WP_002433304.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  CRN29_RS08305 (CRN29_08305) - 1710454..1711962 (-) 1509 WP_023350571.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22722.82 Da        Isoelectric Point: 9.5768

>NTDB_id=250971 CRN29_RS08280 WP_023350568.1 1707279..1707854(-) (comK/comK1) [Staphylococcus capitis strain FDAARGOS_378]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDNIKELKNRKSKVIFANGESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQPIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=250971 CRN29_RS08280 WP_023350568.1 1707279..1707854(-) (comK/comK1) [Staphylococcus capitis strain FDAARGOS_378]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGACCAAGGTATGATGAATATCAGCA
AACTTCAGGTGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTTCAAAGAATTATCGAGAGGT
CCTGCAAATTCTATGGTAATAGCTACCTAAGCAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACCCCTTTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGACAAGACGAAAACATCTGGATAAACAT
GCATTATATCGACAACATCAAAGAACTTAAAAATCGTAAAAGTAAAGTGATATTTGCTAATGGTGAATCATTTATATTAA
ACGTTTCATATCATAGCTTATGGCATCAATATACAAATGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAATCCAGAACAACCCATTGATTATAATCAATCATCGTTAAATATATTTGAAGCTCTCTCAAGGTATTCTCT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.064

98.429

0.749
  comK/comK1 Staphylococcus aureus N315

76.064

98.429

0.749

Multiple sequence alignment