Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LCA_RS01605 Genome accession   NC_007576
Coordinates   342318..342914 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei subsp. sakei 23K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337318..347914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCA_RS01580 (LCA_0333) - 338196..338801 (+) 606 WP_011374042.1 class I SAM-dependent methyltransferase -
  LCA_RS01585 (LCA_0334) - 338874..339218 (+) 345 WP_011374043.1 hypothetical protein -
  LCA_RS01590 (LCA_0335) tadA 339299..339817 (+) 519 WP_011374044.1 tRNA adenosine(34) deaminase TadA -
  LCA_RS01595 (LCA_0336) dnaX 340242..341957 (+) 1716 WP_011374045.1 DNA polymerase III subunit gamma/tau -
  LCA_RS01600 (LCA_0337) - 341984..342292 (+) 309 WP_011374046.1 YbaB/EbfC family nucleoid-associated protein -
  LCA_RS01605 (LCA_0338) recR 342318..342914 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  LCA_RS01610 (LCA_0339) - 342931..343185 (+) 255 WP_011374048.1 YaaL family protein -
  LCA_RS01615 (LCA_0340) tmk 343329..343973 (+) 645 WP_011374049.1 dTMP kinase -
  LCA_RS01620 (LCA_0341) - 343988..344317 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  LCA_RS01625 (LCA_0342) holB 344321..345313 (+) 993 WP_011374051.1 DNA polymerase III subunit delta' -
  LCA_RS01630 (LCA_0343) - 345365..345718 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  LCA_RS01635 (LCA_0344) rsmI 345817..346695 (+) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LCA_RS01640 (LCA_0345) - 346706..347452 (+) 747 WP_011374054.1 acyl-[acyl-carrier-protein] thioesterase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=25065 LCA_RS01605 WP_011374047.1 342318..342914(+) (recR) [Latilactobacillus sakei subsp. sakei 23K]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=25065 LCA_RS01605 WP_011374047.1 342318..342914(+) (recR) [Latilactobacillus sakei subsp. sakei 23K]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACTGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGCAAAGGACCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGCTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48

Multiple sequence alignment