Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CQR34_RS14955 Genome accession   NZ_CP023814
Coordinates   117222..117344 (+) Length   40 a.a.
NCBI ID   WP_306808222.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112222..122344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS00740 (CQR34_00740) - 112372..112692 (-) 321 WP_002216895.1 DUF1132 family protein -
  CQR34_RS00745 (CQR34_00745) - 112811..113110 (-) 300 WP_024464993.1 hypothetical protein -
  CQR34_RS00750 (CQR34_00750) - 113138..113368 (-) 231 WP_002223585.1 hypothetical protein -
  CQR34_RS00755 (CQR34_00755) - 113606..113806 (-) 201 WP_002218476.1 hypothetical protein -
  CQR34_RS00760 (CQR34_00760) - 113810..114121 (-) 312 WP_002218477.1 hypothetical protein -
  CQR34_RS00765 (CQR34_00765) - 114133..115347 (-) 1215 WP_002220395.1 replication initiation factor domain-containing protein -
  CQR34_RS00785 (CQR34_00785) - 116497..116781 (+) 285 WP_002216166.1 GIY-YIG nuclease family protein -
  CQR34_RS14955 pilC 117222..117344 (+) 123 WP_306808222.1 hypothetical protein Machinery gene
  CQR34_RS00790 (CQR34_00790) pilC 117323..120361 (+) 3039 WP_322114703.1 PilC family type IV pilus tip adhesin Machinery gene

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4630.48 Da        Isoelectric Point: 12.3552

>NTDB_id=250269 CQR34_RS14955 WP_306808222.1 117222..117344(+) (pilC) [Neisseria meningitidis strain M26417]
MNKTWKRQVFRHTALYTAILMFSHTGGGGGRRRKCIHTVL

Nucleotide


Download         Length: 123 bp        

>NTDB_id=250269 CQR34_RS14955 WP_306808222.1 117222..117344(+) (pilC) [Neisseria meningitidis strain M26417]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCGCAGGCGCAAATGTATTCATACAGTATTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

90

75

0.675

Multiple sequence alignment