Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CQR34_RS12870 Genome accession   NZ_CP023814
Coordinates   2178375..2178839 (-) Length   154 a.a.
NCBI ID   WP_011799029.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2173375..2183839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS12840 (CQR34_12840) - 2174124..2175179 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  CQR34_RS14110 - 2175585..2175710 (-) 126 Protein_2140 IS5/IS1182 family transposase -
  CQR34_RS12850 (CQR34_12850) - 2175800..2176765 (+) 966 WP_002221064.1 IS30-like element IS1655 family transposase -
  CQR34_RS12855 (CQR34_12855) - 2176791..2177141 (-) 351 Protein_2142 IS5/IS1182 family transposase -
  CQR34_RS15215 (CQR34_12860) - 2177480..2177748 (+) 269 Protein_2143 5'-nucleotidase -
  CQR34_RS12865 (CQR34_12865) comP 2177838..2178287 (-) 450 WP_002221685.1 type IV pilin protein Machinery gene
  CQR34_RS12870 (CQR34_12870) comE 2178375..2178839 (-) 465 WP_011799029.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=250266 CQR34_RS12870 WP_011799029.1 2178375..2178839(-) (comE) [Neisseria meningitidis strain M26417]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=250266 CQR34_RS12870 WP_011799029.1 2178375..2178839(-) (comE) [Neisseria meningitidis strain M26417]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment