Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CQR34_RS12155 Genome accession   NZ_CP023814
Coordinates   2041804..2042268 (-) Length   154 a.a.
NCBI ID   WP_162818804.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2041804..2052319 2041804..2042268 within 0


Gene organization within MGE regions


Location: 2041804..2052319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS12155 (CQR34_12155) comE 2041804..2042268 (-) 465 WP_162818804.1 ComEA family DNA-binding protein Machinery gene
  CQR34_RS12195 (CQR34_12195) - 2048067..2048873 (-) 807 WP_002221447.1 inner membrane protein YpjD -
  CQR34_RS12200 (CQR34_12200) ffh 2049093..2050463 (+) 1371 WP_002221448.1 signal recognition particle protein -
  CQR34_RS12210 (CQR34_12210) dsbA2 2050794..2051489 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CQR34_RS12215 (CQR34_12215) - 2051660..2052319 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=250261 CQR34_RS12155 WP_162818804.1 2041804..2042268(-) (comE) [Neisseria meningitidis strain M26417]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=250261 CQR34_RS12155 WP_162818804.1 2041804..2042268(-) (comE) [Neisseria meningitidis strain M26417]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment