Detailed information NTG0250259

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CQR34_RS11980
• Genome accession: NZ_CP023814
• Coordinates: 2016096..2016956 (+)
• Length: 286 a.a.
• NCBI ID: WP_002220276.1
• Uniprot ID: -
• Organism: Neisseria meningitidis strain M26417
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2011096..2021956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CQR34_RS11955 (CQR34_11955)	dapD	2011606..2012427 (-)	822	WP_002237616.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
CQR34_RS11960 (CQR34_11960)	-	2012437..2012667 (-)	231	WP_025462714.1	hypothetical protein	-
CQR34_RS11965 (CQR34_11965)	pgi	2012637..2014280 (-)	1644	WP_002237615.1	glucose-6-phosphate isomerase	-
CQR34_RS11975 (CQR34_11975)	pilG	2014790..2016022 (+)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
CQR34_RS11980 (CQR34_11980)	pilD	2016096..2016956 (+)	861	WP_002220276.1	A24 family peptidase	Machinery gene
CQR34_RS11985 (CQR34_11985)	coaE	2016958..2017590 (+)	633	WP_002216402.1	dephospho-CoA kinase	-
CQR34_RS11990 (CQR34_11990)	-	2017583..2017792 (+)	210	WP_002216401.1	DNA gyrase inhibitor YacG	-
CQR34_RS11995 (CQR34_11995)	pilF	2017877..2019553 (-)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CQR34_RS12005 (CQR34_12005)	-	2020044..2020490 (-)	447	WP_002216397.1	DUF441 domain-containing protein	-
CQR34_RS12010 (CQR34_12010)	ispB	2020495..2021469 (-)	975	WP_002216396.1	octaprenyl diphosphate synthase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31359.40 Da
• Isoelectric Point: 8.2213

>NTDB_id=250259 CQR34_RS11980 WP_002220276.1 2016096..2016956(+) (pilD) [Neisseria meningitidis strain M26417]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=250259 CQR34_RS11980 WP_002220276.1 2016096..2016956(+) (pilD) [Neisseria meningitidis strain M26417]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGAAGTTTCTTAAA
TGTCGTCATTTACCGCGTGCCGGTCATGATGGAGCGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGCTATCC
CTTAATCGAACTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434