Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CQR34_RS00885 Genome accession   NZ_CP023814
Coordinates   135777..136241 (+) Length   154 a.a.
NCBI ID   WP_162818817.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26417     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130777..141241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQR34_RS00885 (CQR34_00885) comE 135777..136241 (+) 465 WP_162818817.1 ComEA family DNA-binding protein Machinery gene
  CQR34_RS14165 - 136270..136428 (+) 159 WP_002215272.1 hypothetical protein -
  CQR34_RS00890 (CQR34_00890) dnaJ 136510..137631 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  CQR34_RS00895 (CQR34_00895) - 137827..139845 (+) 2019 WP_002224367.1 OPT family oligopeptide transporter -
  CQR34_RS00900 (CQR34_00900) rfbC 139889..140446 (-) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16591.81 Da        Isoelectric Point: 10.8773

>NTDB_id=250225 CQR34_RS00885 WP_162818817.1 135777..136241(+) (comE) [Neisseria meningitidis strain M26417]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=250225 CQR34_RS00885 WP_162818817.1 135777..136241(+) (comE) [Neisseria meningitidis strain M26417]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment