Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BAALB65_RS19750 Genome accession   NZ_CP029069
Coordinates   3969505..3970299 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3964505..3975299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS19730 (BAALB65_19730) - 3964612..3966030 (-) 1419 WP_072176786.1 HAMP domain-containing sensor histidine kinase -
  BAALB65_RS19735 (BAALB65_19735) - 3966027..3966710 (-) 684 WP_095060437.1 response regulator transcription factor -
  BAALB65_RS19740 (BAALB65_19740) - 3966924..3967835 (+) 912 WP_109567344.1 PepSY domain-containing protein -
  BAALB65_RS19745 (BAALB65_19745) htrA 3968222..3969418 (-) 1197 WP_014419339.1 S1C family serine protease Regulator
  BAALB65_RS19750 (BAALB65_19750) vicX 3969505..3970299 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  BAALB65_RS19755 (BAALB65_19755) yycI 3970314..3971153 (-) 840 WP_014419340.1 two-component system regulatory protein YycI -
  BAALB65_RS19760 (BAALB65_19760) yycH 3971140..3972498 (-) 1359 WP_015418614.1 two-component system activity regulator YycH -
  BAALB65_RS19765 (BAALB65_19765) walK 3972488..3974323 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  BAALB65_RS19770 (BAALB65_19770) walR 3974330..3975037 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=250168 BAALB65_RS19750 WP_004393110.1 3969505..3970299(-) (vicX) [Bacillus amyloliquefaciens strain ALB65]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=250168 BAALB65_RS19750 WP_004393110.1 3969505..3970299(-) (vicX) [Bacillus amyloliquefaciens strain ALB65]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCCGTCTACGCG
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCTGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAGGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527