Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAALB65_RS16135 Genome accession   NZ_CP029069
Coordinates   3225859..3226491 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220859..3231491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS16115 (BAALB65_16115) - 3221888..3222073 (-) 186 WP_003151806.1 YvzF family protein -
  BAALB65_RS16120 (BAALB65_16120) - 3222190..3223632 (+) 1443 WP_109567188.1 spore germination protein -
  BAALB65_RS16125 (BAALB65_16125) - 3223607..3224707 (+) 1101 WP_109567189.1 spore germination protein -
  BAALB65_RS16130 (BAALB65_16130) - 3224704..3225816 (+) 1113 WP_109567190.1 Ger(x)C family spore germination protein -
  BAALB65_RS16135 (BAALB65_16135) vraR 3225859..3226491 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  BAALB65_RS16140 (BAALB65_16140) liaS 3226469..3227551 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  BAALB65_RS16145 (BAALB65_16145) liaF 3227548..3228279 (-) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  BAALB65_RS16150 (BAALB65_16150) - 3228306..3229175 (-) 870 WP_109567191.1 DUF4097 domain-containing protein -
  BAALB65_RS16155 (BAALB65_16155) - 3229281..3229958 (-) 678 WP_003151791.1 PspA/IM30 family protein -
  BAALB65_RS16160 (BAALB65_16160) - 3229972..3230352 (-) 381 WP_007410056.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=250143 BAALB65_RS16135 WP_003151798.1 3225859..3226491(-) (vraR) [Bacillus amyloliquefaciens strain ALB65]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=250143 BAALB65_RS16135 WP_003151798.1 3225859..3226491(-) (vraR) [Bacillus amyloliquefaciens strain ALB65]
GTGATTCGAGTGTTACTGATTGATGATCATGAGATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGTGAACCGAAGCTTGAATCGAAAGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACGAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTCTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39