Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAALB65_RS05225 Genome accession   NZ_CP029069
Coordinates   988052..988699 (+) Length   215 a.a.
NCBI ID   WP_103527031.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 983052..993699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS05210 (BAALB65_05210) glpD 983222..984889 (+) 1668 WP_014417285.1 glycerol-3-phosphate dehydrogenase -
  BAALB65_RS05215 (BAALB65_05215) - 985029..986771 (+) 1743 WP_029973221.1 phospho-sugar mutase -
  BAALB65_RS05220 (BAALB65_05220) - 986916..988052 (+) 1137 WP_029973220.1 GAF domain-containing sensor histidine kinase -
  BAALB65_RS05225 (BAALB65_05225) vraR 988052..988699 (+) 648 WP_103527031.1 response regulator transcription factor Regulator
  BAALB65_RS05230 (BAALB65_05230) - 988696..989220 (+) 525 WP_109566813.1 NADPH-dependent FMN reductase -
  BAALB65_RS05235 (BAALB65_05235) - 989234..989476 (-) 243 WP_003155335.1 YhdB family protein -
  BAALB65_RS05240 (BAALB65_05240) - 989668..989991 (+) 324 WP_003155332.1 DUF3889 domain-containing protein -
  BAALB65_RS05245 (BAALB65_05245) - 990036..991490 (-) 1455 WP_014417290.1 peptidoglycan endopeptidase -
  BAALB65_RS05250 (BAALB65_05250) nsrR 991669..992103 (-) 435 WP_007610306.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23986.51 Da        Isoelectric Point: 6.2400

>NTDB_id=250050 BAALB65_RS05225 WP_103527031.1 988052..988699(+) (vraR) [Bacillus amyloliquefaciens strain ALB65]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVIL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSANIVPHVLTHMVQDDQDKEKYYQLTPREKDVLQEI
AKGKSNKEIAAALCISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVKL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=250050 BAALB65_RS05225 WP_103527031.1 988052..988699(+) (vraR) [Bacillus amyloliquefaciens strain ALB65]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCATCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCATTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTAAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGAATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAAAAATATTATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTGTATTTCCGAAAAAACAGTGAAGACCCACGTATCTAACCT
GCTCTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATTATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391