Detailed information NTG0250025

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAALB65_RS01335
• Genome accession: NZ_CP029069
• Coordinates: 216115..217242 (+)
• Length: 375 a.a.
• NCBI ID: WP_069013555.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 211115..222242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS01300 (BAALB65_01300)	-	211734..212003 (+)	270	WP_160342555.1	hemolysin XhlA family protein	-
BAALB65_RS01305 (BAALB65_01305)	-	212016..212279 (+)	264	WP_025284125.1	phage holin	-
BAALB65_RS01310 (BAALB65_01310)	-	212335..213306 (+)	972	WP_069448506.1	N-acetylmuramoyl-L-alanine amidase	-
BAALB65_RS01315 (BAALB65_01315)	-	213503..214135 (-)	633	WP_069013551.1	DUF6338 family protein	-
BAALB65_RS20160	-	214328..214486 (+)	159	WP_162532055.1	hypothetical protein	-
BAALB65_RS01320 (BAALB65_01320)	-	214729..214959 (+)	231	WP_069013552.1	helix-turn-helix domain-containing protein	-
BAALB65_RS01325 (BAALB65_01325)	-	215054..215389 (-)	336	WP_069013553.1	hypothetical protein	-
BAALB65_RS01330 (BAALB65_01330)	-	215455..216000 (+)	546	WP_162532057.1	hypothetical protein	-
BAALB65_RS01335 (BAALB65_01335)	rapC	216115..217242 (+)	1128	WP_069013555.1	Rap family tetratricopeptide repeat protein	Regulator
BAALB65_RS01340 (BAALB65_01340)	-	217418..217606 (-)	189	WP_069013556.1	hypothetical protein	-
BAALB65_RS01345 (BAALB65_01345)	-	217714..217941 (+)	228	WP_069013557.1	hypothetical protein	-
BAALB65_RS01350 (BAALB65_01350)	dinR/lexA	217934..218143 (+)	210	WP_021494575.1	hypothetical protein	Regulator

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44063.12 Da
• Isoelectric Point: 5.2490

>NTDB_id=250025 BAALB65_RS01335 WP_069013555.1 216115..217242(+) (rapC) [Bacillus amyloliquefaciens strain ALB65]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVYDDIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYIDFKRYEKSQPHLEKALELSKELDNKRLISSALYNLGTNFGDRGDYEKAEI
FLRQAVEITEKAKLSNLPHSLFSYAKFLFKQGKMAEGIQASKKGLSAAVYQGDKLFENLQGYLKALYVDAVDQQGVNETI
EYLEKNKNYSYVEDIACETASVYADSREFENSYFYHKKMVDTQTQIQRGECLYEF

Nucleotide

• Length: 1128 bp

>NTDB_id=250025 BAALB65_RS01335 WP_069013555.1 216115..217242(+) (rapC) [Bacillus amyloliquefaciens strain ALB65]
GTGAGTTCTGTTTTACCATCATCAGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTTACCACACGTGTGAGACCGACAATTGATGAG
TTGTTGGAAAAAATCGAAGCGTCAAATAAAGGAATTTCCGGCCTTCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGACCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGTATGATG
ATATTGAGAGAGCGGAGTTTCATTTTAAACTAGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCTATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAATTATATTGATTTTAAGCGTTATGAGAAGAGTCAGCCGCATCTTGAAAAGGCTCTTGAATTATCGAAAGAGTTAGATA
ATAAGAGATTGATTAGTTCTGCTCTTTATAATTTGGGTACAAATTTCGGAGATAGGGGCGACTATGAAAAGGCTGAGATA
TTTTTAAGGCAAGCAGTTGAGATAACCGAAAAAGCAAAATTGAGCAACTTGCCGCACTCTTTATTTTCTTATGCAAAATT
CCTTTTTAAACAGGGGAAAATGGCTGAGGGTATCCAAGCAAGCAAAAAAGGTTTGTCGGCCGCGGTATATCAAGGCGATA
AGCTTTTTGAAAATCTTCAGGGGTATCTGAAGGCACTTTATGTGGATGCAGTGGATCAACAGGGAGTTAATGAAACAATT
GAGTATCTGGAGAAGAATAAGAATTACTCATATGTTGAAGATATTGCTTGCGAAACTGCATCTGTTTACGCAGATTCAAG
GGAGTTTGAGAATTCTTATTTTTATCATAAAAAAATGGTTGATACGCAAACACAAATTCAAAGGGGAGAGTGCCTGTATG
AATTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.857	100	0.432
rapF	Bacillus subtilis subsp. subtilis str. 168	38.36	100	0.387