Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   DCO55_RS06360 Genome accession   NZ_CP029053
Coordinates   1215448..1216113 (-) Length   221 a.a.
NCBI ID   WP_057095925.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210448..1221113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS06345 (DCO55_06475) groES 1212304..1212564 (+) 261 WP_002825273.1 co-chaperone GroES -
  DCO55_RS06350 (DCO55_06480) groL 1212585..1214222 (+) 1638 WP_002859291.1 chaperonin GroEL -
  DCO55_RS06355 (DCO55_06485) dccS 1214265..1215455 (-) 1191 WP_057095924.1 two-component system sensor histidine kinase DccS -
  DCO55_RS06360 (DCO55_06490) ciaR 1215448..1216113 (-) 666 WP_057095925.1 two-component system response regulator DccR Regulator
  DCO55_RS06365 (DCO55_06495) - 1216261..1216860 (+) 600 WP_002859294.1 bacteriohemerythrin -
  DCO55_RS06370 (DCO55_06500) - 1216871..1217119 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  DCO55_RS06380 (DCO55_06510) - 1217378..1218625 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  DCO55_RS06385 (DCO55_06515) - 1218622..1219296 (-) 675 WP_002777451.1 response regulator transcription factor -
  DCO55_RS06390 (DCO55_06520) htrA 1219372..1220790 (-) 1419 WP_167843169.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25477.18 Da        Isoelectric Point: 4.7616

>NTDB_id=249871 DCO55_RS06360 WP_057095925.1 1215448..1216113(-) (ciaR) [Campylobacter jejuni strain c021]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERHFDLLILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNSFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=249871 DCO55_RS06360 WP_057095925.1 1215448..1216113(-) (ciaR) [Campylobacter jejuni strain c021]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGTTTAAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGACATTTTGATCTTTTGATTTTAGATG
TCAAAGTTCCTTTGGGAGATGGATTTTCATTACTTAAAGAATTGAGAAAAAGTGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGATTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGCAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAGCTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362