Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   DCO55_RS02585 Genome accession   NZ_CP029053
Coordinates   489870..490520 (-) Length   216 a.a.
NCBI ID   WP_032593192.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 484870..495520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS02550 (DCO55_02620) - 485721..486575 (-) 855 WP_038402060.1 lambda-exonuclease family protein -
  DCO55_RS02555 (DCO55_02625) - 486577..486804 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  DCO55_RS02560 (DCO55_02630) - 486795..487052 (-) 258 WP_002865124.1 hypothetical protein -
  DCO55_RS02565 (DCO55_02635) - 487043..487312 (-) 270 WP_002874357.1 hypothetical protein -
  DCO55_RS02570 (DCO55_02640) - 487872..488144 (-) 273 WP_002874359.1 hypothetical protein -
  DCO55_RS02575 (DCO55_02645) - 488288..489019 (+) 732 WP_002861653.1 hypothetical protein -
  DCO55_RS02580 (DCO55_02650) - 489053..489877 (-) 825 WP_002874362.1 hypothetical protein -
  DCO55_RS02585 (DCO55_02655) CJE0566 489870..490520 (-) 651 WP_032593192.1 DNA/RNA non-specific endonuclease Regulator
  DCO55_RS02590 (DCO55_02660) - 490536..491033 (-) 498 WP_032593193.1 hypothetical protein -
  DCO55_RS02595 (DCO55_02665) - 491026..492231 (-) 1206 WP_032593196.1 AAA family ATPase -
  DCO55_RS02600 (DCO55_02670) - 492334..493068 (-) 735 WP_032593197.1 S24 family peptidase -
  DCO55_RS08880 (DCO55_02675) - 493180..493398 (+) 219 WP_002826741.1 hypothetical protein -
  DCO55_RS02605 - 493395..494204 (+) 810 WP_253684213.1 hypothetical protein -
  DCO55_RS02610 (DCO55_02690) - 494201..495202 (+) 1002 WP_052795739.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25364.97 Da        Isoelectric Point: 9.9933

>NTDB_id=249850 DCO55_RS02585 WP_032593192.1 489870..490520(-) (CJE0566) [Campylobacter jejuni strain c021]
MKKLIILSLLTTLALADYNQYKPSEDFAKHFTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=249850 DCO55_RS02585 WP_032593192.1 489870..490520(-) (CJE0566) [Campylobacter jejuni strain c021]
ATGAAAAAACTTATAATCTTATCATTATTGACAACTCTAGCCTTAGCTGATTATAACCAATACAAACCAAGTGAAGATTT
TGCTAAGCATTTTACTAAGCAAAACTGCTCACAAGTTTTGGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GCGATGGATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

87.442

99.537

0.87
  CJE1441 Campylobacter jejuni RM1221

86.977

99.537

0.866