Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CPQ91_RS12975 Genome accession   NZ_CP023729
Coordinates   2496865..2498595 (-) Length   576 a.a.
NCBI ID   WP_061578402.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2491865..2503595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS12955 (CPQ91_12955) - 2493127..2493510 (-) 384 WP_003183357.1 serine O-acetyltransferase -
  CPQ91_RS12960 (CPQ91_12960) - 2493641..2493937 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  CPQ91_RS12965 (CPQ91_12965) spo0A 2494309..2495109 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  CPQ91_RS12970 (CPQ91_12970) spoIVB 2495399..2496715 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  CPQ91_RS12975 (CPQ91_12975) recN 2496865..2498595 (-) 1731 WP_061578402.1 DNA repair protein RecN Machinery gene
  CPQ91_RS12980 (CPQ91_12980) ahrC 2498627..2499076 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  CPQ91_RS12985 (CPQ91_12985) - 2499242..2500087 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  CPQ91_RS12990 (CPQ91_12990) dxs 2500084..2501985 (-) 1902 WP_003183372.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CPQ91_RS12995 (CPQ91_12995) - 2502219..2503109 (-) 891 WP_003183374.1 polyprenyl synthetase family protein -
  CPQ91_RS13000 (CPQ91_13000) - 2503099..2503359 (-) 261 WP_097366400.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64505.27 Da        Isoelectric Point: 4.7720

>NTDB_id=249591 CPQ91_RS12975 WP_061578402.1 2496865..2498595(-) (recN) [Bacillus licheniformis strain ATCC 9789]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPEHLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=249591 CPQ91_RS12975 WP_061578402.1 2496865..2498595(-) (recN) [Bacillus licheniformis strain ATCC 9789]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCGATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGTGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAGCTGGGGATTGAAGCCTCGGACGACATGATCGTCATGAGAAGAGATATTAACGCAAACGGCAAAAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCATTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTCGCAGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAGAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGACGAAATCGAATCAGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATACGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAATGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATTAATGAAGGGCTCAATAAAGT
ATCTGAATCGGTAGCCAACGCTTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCACCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGACATCCAAGCTTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCACGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCAGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAGCTGGCCAAACAGATTCAGCAGGAATTGAAAGATCTGTATATGGAAAAATCGACATTTGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCTGTTCAGCTCACAAAGCACGGCATTGACACCGT
TCGTTTCCTGATCTCCACAAACACGGGAGAACCGCTTAAATCCTTGTCAAAGGTTGCTTCAGGAGGAGAGCTCTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGACACTGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCTATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACAACAACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATTGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTAAATCAAGCTAAGCTAGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.076

100

0.811

Multiple sequence alignment