Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CPQ91_RS12965 Genome accession   NZ_CP023729
Coordinates   2494309..2495109 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2489309..2500109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS12935 (CPQ91_12935) - 2490116..2490736 (-) 621 WP_003183353.1 N-acetylmuramoyl-L-alanine amidase family protein -
  CPQ91_RS12940 (CPQ91_12940) - 2490772..2491092 (-) 321 WP_003183355.1 hypothetical protein -
  CPQ91_RS12945 (CPQ91_12945) - 2491091..2491477 (+) 387 WP_134978172.1 hypothetical protein -
  CPQ91_RS12950 (CPQ91_12950) - 2491458..2492888 (+) 1431 WP_016886315.1 IS1182 family transposase -
  CPQ91_RS12955 (CPQ91_12955) - 2493127..2493510 (-) 384 WP_003183357.1 serine O-acetyltransferase -
  CPQ91_RS12960 (CPQ91_12960) - 2493641..2493937 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  CPQ91_RS12965 (CPQ91_12965) spo0A 2494309..2495109 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  CPQ91_RS12970 (CPQ91_12970) spoIVB 2495399..2496715 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  CPQ91_RS12975 (CPQ91_12975) recN 2496865..2498595 (-) 1731 WP_061578402.1 DNA repair protein RecN Machinery gene
  CPQ91_RS12980 (CPQ91_12980) ahrC 2498627..2499076 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  CPQ91_RS12985 (CPQ91_12985) - 2499242..2500087 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=249590 CPQ91_RS12965 WP_003183361.1 2494309..2495109(-) (spo0A) [Bacillus licheniformis strain ATCC 9789]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=249590 CPQ91_RS12965 WP_003183361.1 2494309..2495109(-) (spo0A) [Bacillus licheniformis strain ATCC 9789]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACGAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCAATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment