Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FORC83_RS05965 Genome accession   NZ_CP028933
Coordinates   1147405..1148070 (-) Length   221 a.a.
NCBI ID   WP_002908562.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_083     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142405..1153070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS05950 (FORC83_1198) groES 1144260..1144520 (+) 261 WP_002825273.1 co-chaperone GroES -
  FORC83_RS05955 (FORC83_1199) groL 1144542..1146179 (+) 1638 WP_002858047.1 chaperonin GroEL -
  FORC83_RS05960 (FORC83_1200) dccS 1146222..1147412 (-) 1191 WP_002855957.1 two-component system sensor histidine kinase DccS -
  FORC83_RS05965 (FORC83_1201) ciaR 1147405..1148070 (-) 666 WP_002908562.1 two-component system response regulator DccR Regulator
  FORC83_RS05970 (FORC83_1202) - 1148218..1148817 (+) 600 WP_002855731.1 bacteriohemerythrin -
  FORC83_RS05975 (FORC83_1203) - 1148828..1149076 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  FORC83_RS05985 (FORC83_1204) - 1149334..1150581 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  FORC83_RS05990 (FORC83_1205) - 1150578..1151252 (-) 675 WP_002853196.1 response regulator transcription factor -
  FORC83_RS05995 (FORC83_1206) htrA 1151328..1152746 (-) 1419 WP_002860448.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25659.36 Da        Isoelectric Point: 4.6128

>NTDB_id=249407 FORC83_RS05965 WP_002908562.1 1147405..1148070(-) (ciaR) [Campylobacter jejuni strain FORC_083]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYYNNKALTLPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=249407 FORC83_RS05965 WP_002908562.1 1147405..1148070(-) (ciaR) [Campylobacter jejuni strain FORC_083]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACTATAATAATAAAGCCTTGACTTTACCGAGTAAAGAAATTAAG
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGTACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGGGCTTATGTGAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362