Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   C5B40_RS25540 Genome accession   NZ_CP028917
Coordinates   5337391..5337720 (-) Length   109 a.a.
NCBI ID   WP_024947475.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JB2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5332391..5342720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS25525 uvrB 5333778..5335790 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  C5B40_RS25530 - 5335978..5337174 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  C5B40_RS25540 comEA/comE1 5337391..5337720 (-) 330 WP_024947475.1 ComEA family DNA-binding protein Machinery gene
  C5B40_RS25545 - 5337911..5339908 (-) 1998 WP_024947474.1 polysaccharide biosynthesis protein -
  C5B40_RS25550 - 5340039..5341064 (-) 1026 WP_009313766.1 MraY family glycosyltransferase -
  C5B40_RS25555 - 5341061..5342020 (-) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11443.41 Da        Isoelectric Point: 8.0374

>NTDB_id=249363 C5B40_RS25540 WP_024947475.1 5337391..5337720(-) (comEA/comE1) [Pseudomonas aeruginosa strain JB2]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=249363 C5B40_RS25540 WP_024947475.1 5337391..5337720(-) (comEA/comE1) [Pseudomonas aeruginosa strain JB2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385