Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   CJ12661_RS05860 Genome accession   NZ_CP028911
Coordinates   1145207..1145872 (-) Length   221 a.a.
NCBI ID   WP_044306140.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140207..1150872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS05845 (CJ12661_1151) groES 1142063..1142323 (+) 261 WP_002825273.1 co-chaperone GroES -
  CJ12661_RS05850 (CJ12661_1152) groL 1142344..1143981 (+) 1638 WP_002853460.1 chaperonin GroEL -
  CJ12661_RS05855 (CJ12661_1153) dccS 1144024..1145214 (-) 1191 WP_044306139.1 two-component system sensor histidine kinase DccS -
  CJ12661_RS05860 (CJ12661_1154) ciaR 1145207..1145872 (-) 666 WP_044306140.1 two-component system response regulator DccR Regulator
  CJ12661_RS05865 (CJ12661_1155) - 1146021..1146620 (+) 600 WP_002898488.1 bacteriohemerythrin -
  CJ12661_RS05870 (CJ12661_1156) - 1146631..1146879 (+) 249 WP_044306141.1 ribbon-helix-helix domain-containing protein -
  CJ12661_RS05880 (CJ12661_1158) - 1147135..1148382 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  CJ12661_RS05885 (CJ12661_1159) - 1148379..1149053 (-) 675 WP_002777451.1 response regulator transcription factor -
  CJ12661_RS05890 (CJ12661_1160) htrA 1149129..1150547 (-) 1419 WP_002853541.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25643.36 Da        Isoelectric Point: 4.6178

>NTDB_id=249216 CJ12661_RS05860 WP_044306140.1 1145207..1145872(-) (ciaR) [Campylobacter jejuni strain NCTC 12661]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFEAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYYNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=249216 CJ12661_RS05860 WP_044306140.1 1145207..1145872(-) (ciaR) [Campylobacter jejuni strain NCTC 12661]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTGCTTAAAGAATTAAGAAAAAGCGGAAAGCAAACCCCAGCGATTTTCATG
ACTTCTCTAAACACAACAAACGATTTAAAACAAGGCTTTGAAGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATTAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACTATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAAATAAAG
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGGGCTTATGTGAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.818

99.548

0.367
  ciaR Streptococcus pneumoniae D39

36.818

99.548

0.367
  ciaR Streptococcus pneumoniae R6

36.818

99.548

0.367
  ciaR Streptococcus pneumoniae TIGR4

36.818

99.548

0.367