Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ12567_RS05260 Genome accession   NZ_CP028909
Coordinates   1005800..1006351 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain 12567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1000800..1011351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS05225 (CJ12567_1006) - 1000990..1001415 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJ12567_RS05230 (CJ12567_1007) - 1001479..1002099 (+) 621 WP_002858394.1 NAD(P)H-dependent oxidoreductase -
  CJ12567_RS05235 (CJ12567_1008) - 1002099..1002704 (+) 606 WP_052788445.1 NAD(P)H-dependent oxidoreductase -
  CJ12567_RS05240 (CJ12567_1009) pgsA 1002829..1003365 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJ12567_RS05245 (CJ12567_1010) rseP 1003362..1004468 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  CJ12567_RS05250 (CJ12567_1011) - 1004461..1005327 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  CJ12567_RS05255 (CJ12567_1012) rpsF 1005414..1005791 (+) 378 WP_002865739.1 30S ribosomal protein S6 -
  CJ12567_RS05260 (CJ12567_1013) ssb 1005800..1006351 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  CJ12567_RS05265 (CJ12567_1014) rpsR 1006362..1006622 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJ12567_RS05270 (CJ12567_1015) lon 1006683..1009058 (-) 2376 WP_002868636.1 endopeptidase La -
  CJ12567_RS05275 (CJ12567_1016) - 1009075..1009722 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CJ12567_RS05280 (CJ12567_1017) fliW 1009883..1010272 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJ12567_RS05285 (CJ12567_1018) proC 1010272..1011003 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  CJ12567_RS05290 (CJ12567_1019) ctsT 1011000..1011302 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=249110 CJ12567_RS05260 WP_002865738.1 1005800..1006351(+) (ssb) [Campylobacter jejuni strain 12567]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=249110 CJ12567_RS05260 WP_002865738.1 1005800..1006351(+) (ssb) [Campylobacter jejuni strain 12567]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361