Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CP942_RS09765 Genome accession   NZ_CP023666
Coordinates   2015984..2016430 (+) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2010984..2021430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS09750 - 2011098..2013152 (-) 2055 WP_079289468.1 hydantoinase/oxoprolinase family protein -
  CP942_RS09755 - 2013556..2014296 (+) 741 WP_101561647.1 ribonuclease YeeF family protein -
  CP942_RS09760 - 2014702..2015505 (-) 804 WP_105979335.1 serine/threonine protein kinase -
  CP942_RS22520 - 2015511..2015681 (-) 171 WP_023855671.1 hypothetical protein -
  CP942_RS09765 nucA/comI 2015984..2016430 (+) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CP942_RS09770 nin/comJ 2016448..2016846 (+) 399 WP_023855672.1 competence protein ComJ Regulator
  CP942_RS09775 - 2016886..2018322 (-) 1437 WP_105979336.1 glycoside hydrolase family 1 protein -
  CP942_RS09780 - 2018392..2019117 (-) 726 WP_020450093.1 AAA family ATPase -
  CP942_RS09785 - 2019213..2019764 (-) 552 WP_105979337.1 NAD(P)H-dependent oxidoreductase -
  CP942_RS09790 - 2019948..2020823 (+) 876 WP_105979338.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=249100 CP942_RS09765 WP_020450096.1 2015984..2016430(+) (nucA/comI) [Bacillus paralicheniformis strain Bac48]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=249100 CP942_RS09765 WP_020450096.1 2015984..2016430(+) (nucA/comI) [Bacillus paralicheniformis strain Bac48]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTTGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCTGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment