Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C1A39_RS09595 Genome accession   NZ_CP028896
Coordinates   1843417..1844517 (+) Length   366 a.a.
NCBI ID   WP_024704278.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838417..1849517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS09570 (C1A39_09815) pgsA 1838959..1839501 (-) 543 WP_024704275.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C1A39_RS09575 (C1A39_09820) - 1839514..1840371 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  C1A39_RS09580 (C1A39_09825) - 1840430..1841707 (-) 1278 WP_024704276.1 pitrilysin family protein -
  C1A39_RS09585 (C1A39_09830) - 1841709..1842959 (-) 1251 WP_024704277.1 pitrilysin family protein -
  C1A39_RS09590 (C1A39_09835) yaaA 1843038..1843414 (+) 377 Protein_1830 S4 domain-containing protein YaaA -
  C1A39_RS09595 (C1A39_09840) recF 1843417..1844517 (+) 1101 WP_024704278.1 DNA replication/repair protein RecF Machinery gene
  C1A39_RS09600 (C1A39_09845) guaB 1844686..1846167 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  C1A39_RS09605 (C1A39_09850) trpS 1846344..1847366 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  C1A39_RS09610 (C1A39_09855) - 1847794..1848666 (+) 873 WP_011681764.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42172.35 Da        Isoelectric Point: 9.2442

>NTDB_id=249089 C1A39_RS09595 WP_024704278.1 1843417..1844517(+) (recF) [Streptococcus thermophilus strain CS5]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=249089 C1A39_RS09595 WP_024704278.1 1843417..1844517(+) (recF) [Streptococcus thermophilus strain CS5]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432

Multiple sequence alignment