Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CP943_RS14115 Genome accession   NZ_CP023665
Coordinates   2775068..2775838 (-) Length   256 a.a.
NCBI ID   WP_105981086.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2770068..2780838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS14095 - 2770143..2770955 (-) 813 WP_023855239.1 pyruvate, water dikinase regulatory protein -
  CP943_RS14100 - 2770981..2771619 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  CP943_RS14105 glyS 2771817..2773856 (-) 2040 WP_105981085.1 glycine--tRNA ligase subunit beta -
  CP943_RS14110 glyQ 2773849..2774736 (-) 888 WP_020452239.1 glycine--tRNA ligase subunit alpha -
  CP943_RS14115 recO 2775068..2775838 (-) 771 WP_105981086.1 DNA repair protein RecO Machinery gene
  CP943_RS14120 - 2775876..2776019 (-) 144 WP_003183626.1 YqzL family protein -
  CP943_RS14125 era 2776181..2777086 (-) 906 WP_023855242.1 GTPase Era -
  CP943_RS14130 - 2777067..2777477 (-) 411 WP_105981087.1 cytidine deaminase -
  CP943_RS14135 - 2777610..2777990 (-) 381 WP_020452243.1 diacylglycerol kinase family protein -
  CP943_RS14140 ybeY 2777968..2778444 (-) 477 WP_020452244.1 rRNA maturation RNase YbeY -
  CP943_RS14145 - 2778441..2780495 (-) 2055 WP_231692479.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29541.20 Da        Isoelectric Point: 8.3124

>NTDB_id=249045 CP943_RS14115 WP_105981086.1 2775068..2775838(-) (recO) [Bacillus paralicheniformis strain Bac84]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYITELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLTPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=249045 CP943_RS14115 WP_105981086.1 2775068..2775838(-) (recO) [Bacillus paralicheniformis strain Bac84]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCACTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTACACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGAC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACTTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CAAAGGATGAGCTGAAAAGGGTCATACAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773

Multiple sequence alignment