Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | CP943_RS13680 | Genome accession | NZ_CP023665 |
| Coordinates | 2704055..2704390 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain Bac84 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2699055..2709390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP943_RS13655 | gcvT | 2699485..2700579 (-) | 1095 | WP_095291099.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CP943_RS13665 | - | 2701174..2702853 (+) | 1680 | WP_020452163.1 | DEAD/DEAH box helicase | - |
| CP943_RS13670 | - | 2702860..2703654 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| CP943_RS13675 | sinI | 2703845..2704021 (+) | 177 | WP_023855184.1 | anti-repressor SinI | Regulator |
| CP943_RS13680 | sinR | 2704055..2704390 (+) | 336 | WP_023855185.1 | transcriptional regulator SinR | Regulator |
| CP943_RS13685 | tasA | 2704495..2705289 (-) | 795 | WP_020452167.1 | biofilm matrix protein TasA | - |
| CP943_RS13690 | sipW | 2705362..2705946 (-) | 585 | WP_020452168.1 | signal peptidase I SipW | - |
| CP943_RS13695 | tapA | 2705943..2706671 (-) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CP943_RS13700 | - | 2706949..2707269 (+) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| CP943_RS13705 | - | 2707299..2707481 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| CP943_RS13710 | comGG | 2707570..2707935 (-) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| CP943_RS13715 | comGF | 2707947..2708435 (-) | 489 | WP_224067282.1 | competence type IV pilus minor pilin ComGF | - |
| CP943_RS13720 | comGE | 2708344..2708691 (-) | 348 | WP_023855191.1 | competence type IV pilus minor pilin ComGE | - |
| CP943_RS13725 | comGD | 2708675..2709112 (-) | 438 | WP_039072845.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=249041 CP943_RS13680 WP_023855185.1 2704055..2704390(+) (sinR) [Bacillus paralicheniformis strain Bac84]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=249041 CP943_RS13680 WP_023855185.1 2704055..2704390(+) (sinR) [Bacillus paralicheniformis strain Bac84]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |