Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C1A39_RS03150 Genome accession   NZ_CP028896
Coordinates   589395..589991 (+) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584395..594991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS03125 (C1A39_03180) - 584530..584742 (+) 213 WP_011680924.1 lysophospholipase -
  C1A39_RS03130 (C1A39_03185) - 584990..585181 (+) 192 WP_011227003.1 hypothetical protein -
  C1A39_RS03135 (C1A39_03190) - 585355..586209 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  C1A39_RS03140 (C1A39_03195) - 586213..587049 (+) 837 WP_024704028.1 NAD(P)H-hydrate dehydratase -
  C1A39_RS03145 (C1A39_03200) pbp2b 587171..589285 (+) 2115 WP_024704029.1 penicillin-binding protein PBP2B -
  C1A39_RS03150 (C1A39_03205) recR 589395..589991 (+) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  C1A39_RS09850 - 590132..590928 (+) 797 Protein_567 PRD domain-containing protein -
  C1A39_RS03170 (C1A39_03225) ybeY 591148..591645 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  C1A39_RS03175 (C1A39_03230) - 591626..592030 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  C1A39_RS03180 (C1A39_03235) era 592049..592948 (+) 900 WP_011680930.1 GTPase Era -
  C1A39_RS03185 (C1A39_03240) mutM 592995..593816 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  C1A39_RS03190 (C1A39_03245) coaE 593813..594406 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=249026 C1A39_RS03150 WP_014608122.1 589395..589991(+) (recR) [Streptococcus thermophilus strain CS5]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=249026 C1A39_RS03150 WP_014608122.1 589395..589991(+) (recR) [Streptococcus thermophilus strain CS5]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47