Detailed information NTG0248998

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CPC19_RS11650
• Genome accession: NZ_CP023664
• Coordinates: 2396674..2398044 (+)
• Length: 456 a.a.
• NCBI ID: WP_016391003.1
• Uniprot ID: A0AB33YYW9
• Organism: Cycloclasticus sp. PY97N
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2391674..2403044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPC19_RS11635 (CPC19_11635)	sucD	2392893..2393765 (-)	873	WP_016391001.1	succinate--CoA ligase subunit alpha	-
CPC19_RS11640 (CPC19_11640)	sucC	2393780..2394940 (-)	1161	WP_015005108.1	ADP-forming succinate--CoA ligase subunit beta	-
CPC19_RS11645 (CPC19_11645)	-	2395036..2396667 (+)	1632	WP_016391002.1	PAS domain-containing sensor histidine kinase	-
CPC19_RS11650 (CPC19_11650)	pilR	2396674..2398044 (+)	1371	WP_016391003.1	sigma-54 dependent transcriptional regulator	Regulator
CPC19_RS11655 (CPC19_11655)	-	2398240..2398722 (+)	483	WP_016391004.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CPC19_RS11660 (CPC19_11660)	-	2399409..2400695 (+)	1287	WP_236610549.1	lipopolysaccharide assembly protein LapB	-
CPC19_RS11665 (CPC19_11665)	nadA	2400814..2401902 (-)	1089	WP_015005103.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50244.75 Da
• Isoelectric Point: 6.5072

>NTDB_id=248998 CPC19_RS11650 WP_016391003.1 2396674..2398044(+) (pilR) [Cycloclasticus sp. PY97N]
MPQTLALIVDDEPDILELLEITLSRMGIASKPAHDLSEAKLLLKTHSFDICLTDLQLPDGNGLELVTHVQTHYPSTPTAV
ITAFGSMEVAIKALKLGAFDFVSKPVDLKSLKNLVSSAIKINDTVEPVDRRSRDQLLGDSVMMANVRAKIAKLARSQAPI
YISGESGTGKELVAKLIHEKGPRANQAFVPINCGAIPHELMESEFFGHKKGSFTGAIADKKGLFQLAHGGTLFLDEIADL
PLHMQVKLLRAIQEKSIRPIGSDTETVIDTRILCATHKNLSELVEKGSFRQDLYYRINVIELPLPALRERKEDIQQLATH
ILQKLNTEHGNTTISLSENALKALTKYPFPGNVRELENILERAFTLCENGLIHQADLQLPENPHNIPNSINTPASSPNAS
DESSDAPLEDYLGTLEKEAIVNALEKTRWNKTAAAKDLGITFRALRYRLKKLGLDT

Nucleotide

• Length: 1371 bp

>NTDB_id=248998 CPC19_RS11650 WP_016391003.1 2396674..2398044(+) (pilR) [Cycloclasticus sp. PY97N]
ATGCCGCAAACACTCGCCCTTATTGTCGACGATGAACCAGACATTTTAGAGTTACTGGAAATCACCCTGTCTCGCATGGG
CATCGCCAGTAAACCAGCACACGACCTTAGCGAAGCTAAGCTGCTTTTAAAGACCCACTCTTTTGATATTTGCCTAACCG
ACCTGCAATTACCAGACGGTAACGGCTTAGAGCTGGTTACGCACGTACAAACACACTACCCCAGCACACCCACCGCTGTT
ATTACCGCTTTTGGCAGTATGGAAGTTGCTATCAAAGCCCTCAAGCTGGGTGCCTTTGATTTTGTTTCCAAACCGGTTGA
CTTAAAAAGCTTAAAAAACCTTGTTAGCTCCGCCATAAAAATTAACGATACTGTTGAACCTGTTGATCGAAGAAGTCGCG
ATCAATTATTGGGAGACTCTGTAATGATGGCTAACGTACGAGCCAAAATTGCAAAGCTTGCTCGCAGCCAAGCACCCATC
TATATCAGTGGTGAATCAGGTACCGGTAAAGAATTAGTTGCCAAGCTAATTCATGAAAAAGGCCCTCGGGCTAATCAAGC
TTTTGTCCCCATTAACTGCGGCGCCATCCCCCATGAACTGATGGAAAGTGAGTTTTTTGGCCATAAAAAAGGCAGCTTTA
CCGGCGCTATCGCTGATAAAAAGGGGCTATTCCAACTTGCTCATGGTGGCACTTTATTTTTAGATGAGATCGCCGACCTC
CCTCTACACATGCAAGTTAAATTATTACGGGCCATACAAGAAAAGTCCATCCGCCCCATAGGCAGTGATACTGAAACCGT
GATCGACACCAGAATTTTGTGTGCCACCCATAAAAACTTAAGCGAACTCGTTGAAAAAGGGAGCTTTCGACAGGATTTAT
ATTACCGGATTAATGTCATCGAACTCCCTTTGCCAGCTTTGCGCGAACGCAAGGAAGACATCCAGCAACTCGCCACTCAT
ATTTTACAAAAATTAAATACCGAACATGGAAATACTACTATAAGCCTTAGTGAAAATGCGCTAAAAGCCCTAACAAAGTA
CCCCTTCCCTGGCAATGTACGCGAACTAGAAAATATACTCGAACGCGCATTTACCCTATGTGAAAATGGGCTTATTCACC
AGGCAGATTTACAGCTGCCCGAAAACCCTCATAACATACCTAACTCAATCAATACCCCAGCGTCATCGCCCAATGCAAGT
GACGAATCATCAGACGCACCATTGGAAGATTACCTTGGCACATTGGAAAAAGAAGCCATCGTCAATGCATTAGAAAAAAC
ACGCTGGAACAAAACAGCCGCAGCAAAAGACCTAGGTATTACCTTTCGTGCCTTACGATACCGACTAAAAAAACTAGGCT
TAGACACTTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (414-452)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.607	100	0.599
pilR	Acinetobacter baumannii strain A118	52.688	100	0.537