Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DB248_RS09975 Genome accession   NZ_CP028841
Coordinates   1899137..1900243 (+) Length   368 a.a.
NCBI ID   WP_010922801.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain CCUG 4207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894137..1905243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB248_RS09950 (DB248_09955) hasA 1894815..1896074 (+) 1260 WP_029714250.1 hyaluronan synthase HasA -
  DB248_RS09955 (DB248_09960) hasB 1896110..1897318 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  DB248_RS09965 (DB248_09970) hasC 1897500..1898414 (+) 915 WP_010922799.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  DB248_RS09970 (DB248_09975) yaaA 1898722..1899135 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  DB248_RS09975 (DB248_09980) recF 1899137..1900243 (+) 1107 WP_010922801.1 DNA replication/repair protein RecF Machinery gene
  DB248_RS09980 (DB248_09985) - 1900298..1901161 (-) 864 WP_002992310.1 GRP family sugar transporter -
  DB248_RS09985 (DB248_09990) guaB 1901363..1902844 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  DB248_RS09990 (DB248_09995) trpS 1903152..1904174 (-) 1023 WP_010922803.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41839.76 Da        Isoelectric Point: 7.8294

>NTDB_id=248628 DB248_RS09975 WP_010922801.1 1899137..1900243(+) (recF) [Streptococcus pyogenes strain CCUG 4207]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=248628 DB248_RS09975 WP_010922801.1 1899137..1900243(+) (recF) [Streptococcus pyogenes strain CCUG 4207]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462