Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CPQ89_RS07525 Genome accession   NZ_CP023566
Coordinates   1537794..1539473 (+) Length   559 a.a.
NCBI ID   WP_112194926.1    Uniprot ID   A0AAD0KYV4
Organism   Ligilactobacillus murinus strain CR141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532794..1544473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ89_RS07495 (CPQ89_07470) folD 1533016..1533864 (+) 849 WP_112194915.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  CPQ89_RS07500 (CPQ89_07475) xseA 1533864..1535207 (+) 1344 WP_112194917.1 exodeoxyribonuclease VII large subunit -
  CPQ89_RS07505 (CPQ89_07480) - 1535204..1535431 (+) 228 WP_004047599.1 exodeoxyribonuclease VII small subunit -
  CPQ89_RS07510 (CPQ89_07485) - 1535536..1536414 (+) 879 WP_112194920.1 polyprenyl synthetase family protein -
  CPQ89_RS07515 (CPQ89_07490) - 1536429..1537256 (+) 828 WP_112194922.1 TlyA family RNA methyltransferase -
  CPQ89_RS07520 (CPQ89_07495) - 1537277..1537735 (+) 459 WP_112194924.1 arginine repressor -
  CPQ89_RS07525 (CPQ89_07500) recN 1537794..1539473 (+) 1680 WP_112194926.1 DNA repair protein RecN Machinery gene
  CPQ89_RS07530 (CPQ89_07505) lexA 1539560..1540183 (-) 624 WP_004047608.1 transcriptional repressor LexA -
  CPQ89_RS07535 (CPQ89_07510) - 1540349..1540645 (+) 297 WP_112194928.1 DUF896 domain-containing protein -
  CPQ89_RS07540 (CPQ89_07515) - 1540726..1540950 (+) 225 WP_004047611.1 YneF family protein -
  CPQ89_RS07545 (CPQ89_07520) - 1540999..1541625 (-) 627 WP_056958638.1 lysophospholipid acyltransferase family protein -
  CPQ89_RS07550 (CPQ89_07525) - 1541831..1542589 (+) 759 WP_004047615.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CPQ89_RS07555 (CPQ89_07530) - 1542573..1542860 (+) 288 WP_004047616.1 GIY-YIG nuclease family protein -
  CPQ89_RS07560 (CPQ89_07535) - 1543002..1543997 (+) 996 WP_162626459.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63103.38 Da        Isoelectric Point: 4.5892

>NTDB_id=248506 CPQ89_RS07525 WP_112194926.1 1537794..1539473(+) (recN) [Ligilactobacillus murinus strain CR141]
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELATIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKQTAKRLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=248506 CPQ89_RS07525 WP_112194926.1 1537794..1539473(+) (recN) [Ligilactobacillus murinus strain CR141]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGCGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGCACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGCCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTGCATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTGAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTACGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGTGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAGCAGACTGCTA
AACGGCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTCGAATTTTATATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGGATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGGGTCAGTGGACGTGTCGCACAAGCGATCGCTGAAAAGATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCAGCTGTGGCAGACCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.14

100

0.487

Multiple sequence alignment