Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DBP13_RS21215 Genome accession   NZ_CP028834
Coordinates   4604714..4606123 (-) Length   469 a.a.
NCBI ID   WP_128802617.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4599714..4611123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS21190 - 4600071..4600724 (-) 654 WP_108011027.1 hypothetical protein -
  DBP13_RS21195 - 4600712..4601251 (-) 540 WP_108011029.1 SigE family RNA polymerase sigma factor -
  DBP13_RS21200 - 4601491..4602426 (-) 936 WP_128802614.1 A/G-specific adenine glycosylase -
  DBP13_RS21205 - 4602594..4603442 (+) 849 WP_128802615.1 hypothetical protein -
  DBP13_RS21210 disA 4603508..4604632 (-) 1125 WP_128802616.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  DBP13_RS21215 radA 4604714..4606123 (-) 1410 WP_128802617.1 DNA repair protein RadA Machinery gene
  DBP13_RS21220 - 4606340..4608034 (+) 1695 WP_128802618.1 hypothetical protein -
  DBP13_RS21225 - 4608584..4609432 (-) 849 WP_128802619.1 hypothetical protein -
  DBP13_RS21230 - 4609504..4610436 (+) 933 WP_108011042.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49801.87 Da        Isoelectric Point: 7.7220

>NTDB_id=248495 DBP13_RS21215 WP_128802617.1 4604714..4606123(-) (radA) [Streptomyces sp. M2]
MTARTKTTKDRPSYRCKECGWQTAKWLGRCPECQAWGTIDEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLATVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMSQVREVTGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=248495 DBP13_RS21215 WP_128802617.1 4604714..4606123(-) (radA) [Streptomyces sp. M2]
ATGACTGCCCGTACCAAGACCACCAAGGACCGTCCGTCCTACCGCTGCAAGGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGTCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGACGAATACGGCGCGCCCGCGGTGCGTACGACGGCGCCGGGGC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCAGCACCGGGGTTCCGGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCGGTGGTGCTGGTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
CCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTGTATGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGGGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGATCTGGCCACCGTCCTC
GGCCACTTGGACGCGGTGAAGCCCTCGCTGCTCGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGTCCCAGGTCCGCGAGGTCACCGGGGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTCAGTTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGCGGCGTCAAGAACCGCTACGGCACCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTTACCGACCCGAGCGGACTTTTCCTGACCAGACGTGATGAACCGGTCCCCG
GCACCTGTCTGACGGTCACGCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGCACGACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCCGCCGCCGACCTCG
CCGTGGCCCTCGCGCTGGCCTCGGCCGCGAGCGACACCCCACTGCCGAAGAACCTGGTCGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGACTCGCCGAGGCGCACCGCCTGGGCTTCACCCACGCGCTCGT
TCCGGGCGACCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATAGGAGACGCTCTGCGGGTCCTTC
CGCGCTCCCGTCGCCGAGAGGCCCCGCGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

44.098

95.736

0.422
  radA Streptococcus mitis SK321

44.098

95.736

0.422
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae TIGR4

43.653

95.736

0.418
  radA Streptococcus pneumoniae D39

43.653

95.736

0.418
  radA Streptococcus pneumoniae Rx1

43.653

95.736

0.418
  radA Streptococcus pneumoniae R6

43.653

95.736

0.418