Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPQ89_RS02530 Genome accession   NZ_CP023566
Coordinates   502715..503269 (+) Length   184 a.a.
NCBI ID   WP_112193831.1    Uniprot ID   A0A2Z4VY05
Organism   Ligilactobacillus murinus strain CR141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 497715..508269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ89_RS02515 (CPQ89_02500) gyrA 498850..501312 (+) 2463 WP_112193829.1 DNA gyrase subunit A -
  CPQ89_RS02520 (CPQ89_02505) - 501411..502047 (-) 637 Protein_516 NAD(P)-dependent oxidoreductase -
  CPQ89_RS02525 (CPQ89_02510) rpsF 502388..502678 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  CPQ89_RS02530 (CPQ89_02515) ssb 502715..503269 (+) 555 WP_112193831.1 single-stranded DNA-binding protein Machinery gene
  CPQ89_RS02535 (CPQ89_02520) rpsR 503291..503527 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  CPQ89_RS02540 (CPQ89_02525) - 504107..504637 (-) 531 WP_112193833.1 hypothetical protein -
  CPQ89_RS02545 (CPQ89_02530) - 504798..505004 (+) 207 WP_004049696.1 hypothetical protein -
  CPQ89_RS02550 (CPQ89_02535) - 505203..505730 (+) 528 WP_112193836.1 helix-turn-helix domain-containing protein -
  CPQ89_RS02555 (CPQ89_02540) - 505909..506286 (+) 378 WP_337589663.1 IS3 family transposase -
  CPQ89_RS02560 (CPQ89_02545) - 506459..506734 (-) 276 WP_112193840.1 hypothetical protein -
  CPQ89_RS02565 (CPQ89_02550) - 506802..507764 (-) 963 WP_112193842.1 IS30 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20064.77 Da        Isoelectric Point: 4.6382

>NTDB_id=248492 CPQ89_RS02530 WP_112193831.1 502715..503269(+) (ssb) [Ligilactobacillus murinus strain CR141]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTSN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=248492 CPQ89_RS02530 WP_112193831.1 502715..503269(+) (ssb) [Ligilactobacillus murinus strain CR141]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCTGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGAATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTTCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4VY05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.081

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571

Multiple sequence alignment