Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PFL01_RS20965 Genome accession   NC_007492
Coordinates   4713606..4714241 (-) Length   211 a.a.
NCBI ID   WP_011335450.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4708606..4719241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS20930 (Pfl01_4170) - 4709002..4709472 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  PFL01_RS20935 (Pfl01_4171) murB 4709720..4710739 (-) 1020 WP_011335447.1 UDP-N-acetylmuramate dehydrogenase -
  PFL01_RS20940 (Pfl01_4172) - 4710736..4711200 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  PFL01_RS20945 (Pfl01_4173) kdsB 4711200..4711964 (-) 765 WP_011335448.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFL01_RS20950 (Pfl01_4174) - 4711961..4712146 (-) 186 WP_003179363.1 Trm112 family protein -
  PFL01_RS20955 (Pfl01_4175) lpxK 4712171..4713181 (-) 1011 WP_011335449.1 tetraacyldisaccharide 4'-kinase -
  PFL01_RS20960 (Pfl01_4176) - 4713181..4713609 (-) 429 WP_007950767.1 ExbD/TolR family protein -
  PFL01_RS20965 (Pfl01_4177) exbB 4713606..4714241 (-) 636 WP_011335450.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFL01_RS20970 (Pfl01_4178) comA 4714320..4716563 (-) 2244 WP_011335451.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFL01_RS20975 (Pfl01_4179) - 4716700..4717218 (+) 519 WP_011335452.1 DUF2062 domain-containing protein -
  PFL01_RS20980 (Pfl01_4180) - 4717273..4718052 (-) 780 WP_011335453.1 ABC transporter permease -
  PFL01_RS20985 (Pfl01_4181) - 4718049..4718981 (-) 933 WP_011335454.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.97 Da        Isoelectric Point: 7.3615

>NTDB_id=24837 PFL01_RS20965 WP_011335450.1 4713606..4714241(-) (exbB) [Pseudomonas fluorescens Pf0-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGAGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=24837 PFL01_RS20965 WP_011335450.1 4713606..4714241(-) (exbB) [Pseudomonas fluorescens Pf0-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGCTGCTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCACCGGCGCCGGCATGACCACCAACGCTTCGGTCCTGGCCGGCGGTATTTCCAAGGCCCTGATCACCACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment