Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CPG34_RS05635 Genome accession   NZ_CP023545
Coordinates   1117269..1118039 (-) Length   256 a.a.
NCBI ID   WP_002781662.1    Uniprot ID   A0A3Z9V747
Organism   Campylobacter coli strain CFSAN032805     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1112269..1123039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG34_RS05605 (CPG34_05605) aspS 1112405..1114156 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  CPG34_RS05610 (CPG34_05610) - 1114153..1114728 (+) 576 WP_002781658.1 adenylate kinase -
  CPG34_RS05615 (CPG34_05615) ppa 1114738..1115256 (+) 519 WP_002776378.1 inorganic diphosphatase -
  CPG34_RS05620 (CPG34_05620) msrA 1115304..1115804 (+) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CPG34_RS05625 (CPG34_05625) - 1116027..1116881 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CPG34_RS05630 (CPG34_05630) ruvX 1116892..1117272 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  CPG34_RS05635 (CPG34_05635) dprA 1117269..1118039 (-) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  CPG34_RS05640 (CPG34_05640) - 1118029..1119081 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  CPG34_RS05645 (CPG34_05645) ilvC 1119084..1120106 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  CPG34_RS05650 (CPG34_05650) - 1120229..1122163 (+) 1935 WP_002793328.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=248351 CPG34_RS05635 WP_002781662.1 1117269..1118039(-) (dprA) [Campylobacter coli strain CFSAN032805]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=248351 CPG34_RS05635 WP_002781662.1 1117269..1118039(-) (dprA) [Campylobacter coli strain CFSAN032805]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9V747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment