Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY53_RS06620 Genome accession   NZ_CP028772
Coordinates   1337638..1338375 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1332638..1343375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY53_RS06595 (AOY53_07040) - 1333374..1334000 (+) 627 WP_069934482.1 iron-sulfur cluster assembly scaffold protein SufA -
  AOY53_RS06600 (AOY53_07045) - 1334000..1334380 (+) 381 WP_000157344.1 type II toxin-antitoxin system YafO family toxin -
  AOY53_RS06605 (AOY53_07050) - 1334855..1336324 (+) 1470 WP_057108823.1 AAA family ATPase -
  AOY53_RS06610 (AOY53_07055) - 1336571..1336872 (+) 302 Protein_1300 site-specific DNA-methyltransferase -
  AOY53_RS06615 (AOY53_07060) raiA 1337026..1337367 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY53_RS06620 (AOY53_07070) comL 1337638..1338375 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY53_RS06625 (AOY53_07075) rluD 1338510..1339490 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY53_RS06630 (AOY53_07080) yfiH 1339487..1340218 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  AOY53_RS06635 (AOY53_07085) clpC 1340348..1342921 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=248306 AOY53_RS06620 WP_000197686.1 1337638..1338375(-) (comL) [Escherichia coli strain A2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=248306 AOY53_RS06620 WP_000197686.1 1337638..1338375(-) (comL) [Escherichia coli strain A2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376