Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY54_RS17060 Genome accession   NZ_CP028771
Coordinates   3531095..3531832 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526095..3536832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY54_RS17045 (AOY54_18025) clpC 3526549..3529122 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  AOY54_RS17050 (AOY54_18030) yfiH 3529252..3529983 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY54_RS17055 (AOY54_18035) rluD 3529980..3530960 (-) 981 WP_000079118.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY54_RS17060 (AOY54_18040) comL 3531095..3531832 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY54_RS17065 (AOY54_18050) raiA 3532102..3532443 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY54_RS17070 (AOY54_18055) pheL 3532547..3532594 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY54_RS17075 (AOY54_18060) pheA 3532693..3533853 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY54_RS17080 (AOY54_18065) tyrA 3533896..3535017 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY54_RS17085 (AOY54_18070) aroF 3535028..3536098 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY54_RS17090 (AOY54_18075) yfiL 3536309..3536674 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=248252 AOY54_RS17060 WP_000197686.1 3531095..3531832(+) (comL) [Escherichia coli strain A3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=248252 AOY54_RS17060 WP_000197686.1 3531095..3531832(+) (comL) [Escherichia coli strain A3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376