Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CPG32_RS04225 | Genome accession | NZ_CP023539 |
| Coordinates | 817968..818942 (+) | Length | 324 a.a. |
| NCBI ID | WP_002491905.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain FDAARGOS_377 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 812968..823942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPG32_RS04190 (CPG32_04190) | rpmG | 813392..813541 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| CPG32_RS04195 (CPG32_04195) | - | 813791..814327 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| CPG32_RS04200 (CPG32_04200) | - | 814344..815801 (+) | 1458 | WP_002491909.1 | rhomboid family intramembrane serine protease | - |
| CPG32_RS04205 (CPG32_04205) | - | 815785..815988 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| CPG32_RS04210 (CPG32_04210) | - | 815985..816971 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| CPG32_RS04215 (CPG32_04215) | - | 816971..817294 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| CPG32_RS04220 (CPG32_04220) | - | 817298..817921 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| CPG32_RS04225 (CPG32_04225) | comGA | 817968..818942 (+) | 975 | WP_002491905.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CPG32_RS04230 (CPG32_04230) | comGB | 818914..819978 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| CPG32_RS04235 (CPG32_04235) | comGC | 819993..820307 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CPG32_RS04240 (CPG32_04240) | comGD | 820240..820734 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| CPG32_RS04245 (CPG32_04245) | - | 820721..821014 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| CPG32_RS04250 (CPG32_04250) | - | 821076..821435 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| CPG32_RS04260 (CPG32_04260) | - | 821589..822107 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| CPG32_RS04265 (CPG32_04265) | gcvT | 822277..823368 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36993.89 Da Isoelectric Point: 8.2830
>NTDB_id=248249 CPG32_RS04225 WP_002491905.1 817968..818942(+) (comGA) [Staphylococcus lugdunensis strain FDAARGOS_377]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=248249 CPG32_RS04225 WP_002491905.1 817968..818942(+) (comGA) [Staphylococcus lugdunensis strain FDAARGOS_377]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |