Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY55_RS06410 Genome accession   NZ_CP028770
Coordinates   1332928..1333665 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327928..1338665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY55_RS06380 (AOY55_06720) yfiL 1328086..1328451 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  AOY55_RS06385 (AOY55_06725) aroF 1328661..1329731 (+) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY55_RS06390 (AOY55_06730) tyrA 1329742..1330863 (+) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY55_RS06395 (AOY55_06735) pheA 1330906..1332066 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY55_RS06400 (AOY55_06740) pheL 1332165..1332212 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY55_RS06405 (AOY55_06745) raiA 1332316..1332657 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY55_RS06410 (AOY55_06755) comL 1332928..1333665 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY55_RS06415 (AOY55_06760) rluD 1333800..1334780 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY55_RS06420 (AOY55_06765) yfiH 1334777..1335508 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY55_RS06425 (AOY55_06770) clpC 1335638..1338211 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=248141 AOY55_RS06410 WP_000197686.1 1332928..1333665(-) (comL) [Escherichia coli strain A4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=248141 AOY55_RS06410 WP_000197686.1 1332928..1333665(-) (comL) [Escherichia coli strain A4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376