Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CO687_RS04990 Genome accession   NZ_CP023511
Coordinates   1007596..1009353 (+) Length   585 a.a.
NCBI ID   WP_061594156.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1002596..1014353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04965 (CO687_04965) scrK 1003180..1004079 (+) 900 WP_045773521.1 fructokinase ScrK -
  CO687_RS04970 (CO687_04970) - 1004128..1004538 (+) 411 WP_061596784.1 peptide deformylase -
  CO687_RS04975 (CO687_04975) - 1004548..1005117 (+) 570 WP_061596786.1 hypothetical protein -
  CO687_RS04980 (CO687_04980) - 1005389..1005847 (+) 459 WP_061594154.1 MarR family transcriptional regulator -
  CO687_RS04985 (CO687_04985) rcrP 1005840..1007606 (+) 1767 WP_061594155.1 ABC transporter ATP-binding protein Regulator
  CO687_RS04990 (CO687_04990) rcrQ 1007596..1009353 (+) 1758 WP_061594156.1 ABC transporter ATP-binding protein Regulator
  CO687_RS04995 (CO687_04995) manA 1009513..1010457 (+) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  CO687_RS05000 (CO687_05000) - 1010897..1012510 (+) 1614 WP_061594157.1 CTP synthase -
  CO687_RS05005 (CO687_05005) - 1012581..1012991 (+) 411 WP_048777803.1 effector binding domain-containing protein -
  CO687_RS05015 (CO687_05015) - 1013399..1014280 (+) 882 WP_008809690.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64866.76 Da        Isoelectric Point: 5.0090

>NTDB_id=247968 CO687_RS04990 WP_061594156.1 1007596..1009353(+) (rcrQ) [Streptococcus gordonii strain FDAARGOS_371]
MENKKTSLFTQMKPYIKGFQLPFVIAVAGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFE
FLAEADMEDDSHKLQQLTSVKGHVQFKDIFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQ
IMIDGVDIKNMQRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEQGGFYADLYNSQFVEEEQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=247968 CO687_RS04990 WP_061594156.1 1007596..1009353(+) (rcrQ) [Streptococcus gordonii strain FDAARGOS_371]
ATGGAAAATAAAAAAACATCTTTATTTACCCAGATGAAGCCCTATATTAAAGGCTTCCAGCTTCCTTTTGTCATTGCAGT
AGCCGGTGCTATCATTTCTAGTATTATTACAGTGTTTGGTCCCTATAAGTTGCGTGAAATCACAAACTTAATTACAGAAG
GTCTAGTAGGTGAGATGGACTTGGGAGCTATCTCAAATATAGGTTTCTTCCTGGCTTTCCTTTATGTTGTGGGTTCTCTT
ATCAATTATGCGCAGGGTTACGCTATTTCGGATATGATTCAGCACTTTTCAAAACGTTTGAGAACTGCGATTGCAGAGAA
AATCAACCGCCTGCCATTAAGCTACTTTGATAGTCATTCCCAAGGGGATACCCTATCACGTGTGACAAATGATGTAGATA
CAGTTGGACAATCGTTGACACAGAGCTTGGGGACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTGCTCTTTATGATG
TTTTATACTAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGTTTCGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAGAGATATTTCCAAGAACAGCAAAGTAACCTAGCAGCTATCAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGTTACAATGGTGCAGAAAAGACACGCTTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCACAATTTATTTCAGGAATTATGTTTCCTCTGATGAACTTTGTTGGCAATTTTGGATATGTGATGGTCGT
GATTGTGGGTGCTACAATGGCTATTAATGGCTCCATCAGCATGGGTACGATTGTAGCTTTCATGGTCTATGTACGAATTT
TTTCTCAACCTCTTTCCCAAATCGCCCAGGGAATTACAACACTCCAATCTGCTAGTGCAGCTATGGGACGTGTCTTTGAG
TTTCTAGCAGAAGCAGATATGGAAGATGATTCTCATAAACTTCAACAATTAACAAGTGTAAAAGGACATGTCCAGTTTAA
AGATATCTTCTTTGGTTATAATCCTGATAAGACTATTATTCACGATTTCTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGCCCTACTGGTGCGGGTAAGACAACAATTGTCAACCTACTCATGAAGTTCTATGATATTGAACGTGGGCAA
ATCATGATTGACGGTGTAGATATCAAGAATATGCAACGCTCAGAAGTTCACGATGCTTTCTCTATGGTTCTACAAGATAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACGGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTGCCGGACGGCTATGATACAGTTCTGGATGACACAGTCAGCCTT
TCTGTTGGTCAAAAGCAGCTCCTGACTATTGCAAGGGCTCTGCTCAAAGATGCGCCACTCCTTATCTTAGATGAGGCGAC
TTCATCTGTCGATACACGGACGGAAGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGAACGTCCTTTGTCA
TTGCTCACCGCCTGTCTACTATTCGCAATGCTGATTTGATCCTAGTCATGCGTGATGGGAATATTATCGAGCAAGGAAAC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCCGATCTTTACAACAGTCAGTTTGTTGAAGAAGAGCAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.619

99.487

0.703

Multiple sequence alignment