Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO680_RS06920 Genome accession   NZ_CP023501
Coordinates   1385875..1386426 (-) Length   183 a.a.
NCBI ID   WP_002828738.1    Uniprot ID   C5RAY6
Organism   Weissella paramesenteroides strain FDAARGOS_414     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1380875..1391426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO680_RS06885 (CO680_06885) purQ 1381447..1382133 (-) 687 WP_002828729.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  CO680_RS06890 (CO680_06890) purS 1382130..1382393 (-) 264 WP_002828731.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  CO680_RS06895 (CO680_06895) purC 1382395..1383132 (-) 738 WP_002828732.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  CO680_RS06900 (CO680_06900) purK 1383135..1384256 (-) 1122 WP_002828733.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CO680_RS06905 (CO680_06905) purE 1384249..1384740 (-) 492 WP_002828734.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CO680_RS06910 (CO680_06910) - 1385009..1385476 (-) 468 WP_002828736.1 hypothetical protein -
  CO680_RS06915 (CO680_06915) rpsR 1385576..1385818 (-) 243 WP_002828737.1 30S ribosomal protein S18 -
  CO680_RS06920 (CO680_06920) ssb 1385875..1386426 (-) 552 WP_002828738.1 single-stranded DNA-binding protein Machinery gene
  CO680_RS06925 (CO680_06925) rpsF 1386497..1386796 (-) 300 WP_002828739.1 30S ribosomal protein S6 -
  CO680_RS06930 (CO680_06930) - 1386923..1387867 (-) 945 WP_002828740.1 nucleoside hydrolase -
  CO680_RS06935 (CO680_06935) - 1387934..1388920 (-) 987 WP_040760995.1 ribose-phosphate diphosphokinase -
  CO680_RS06940 (CO680_06940) glmU 1389045..1390427 (-) 1383 WP_002828742.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CO680_RS06945 (CO680_06945) purR 1390449..1391297 (-) 849 WP_002828743.1 pur operon repressor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19776.29 Da        Isoelectric Point: 4.7513

>NTDB_id=247791 CO680_RS06920 WP_002828738.1 1385875..1386426(-) (ssb) [Weissella paramesenteroides strain FDAARGOS_414]
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=247791 CO680_RS06920 WP_002828738.1 1385875..1386426(-) (ssb) [Weissella paramesenteroides strain FDAARGOS_414]
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGTATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGTAGCCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTTAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5RAY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.761

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.519

Multiple sequence alignment